Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AUO94_RS06490 Genome accession   NZ_CP013661
Coordinates   1322127..1323077 (-) Length   316 a.a.
NCBI ID   WP_058386452.1    Uniprot ID   -
Organism   Planococcus kocurii strain ATCC 43650     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1317127..1328077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUO94_RS06465 (AUO94_14790) - 1317491..1318159 (-) 669 WP_058386447.1 ABC transporter ATP-binding protein -
  AUO94_RS06470 (AUO94_14795) - 1318163..1319227 (-) 1065 WP_058386448.1 ABC transporter permease -
  AUO94_RS06475 (AUO94_14800) - 1319448..1320404 (-) 957 WP_058386449.1 siderophore ABC transporter substrate-binding protein -
  AUO94_RS06480 (AUO94_14805) - 1320426..1321187 (-) 762 WP_058386450.1 ABC transporter ATP-binding protein -
  AUO94_RS06485 (AUO94_14810) - 1321184..1322134 (-) 951 WP_058386451.1 iron chelate uptake ABC transporter family permease subunit -
  AUO94_RS06490 (AUO94_14815) ceuB 1322127..1323077 (-) 951 WP_058386452.1 ABC transporter permease Machinery gene
  AUO94_RS06495 (AUO94_14820) - 1323360..1324223 (-) 864 WP_058386453.1 DUF6612 family protein -
  AUO94_RS06500 (AUO94_14825) - 1324417..1326135 (+) 1719 WP_058386454.1 ABC transporter ATP-binding protein -
  AUO94_RS06505 (AUO94_14830) hflX 1326188..1327459 (-) 1272 WP_058386455.1 GTPase HflX -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34854.06 Da        Isoelectric Point: 10.0983

>NTDB_id=163642 AUO94_RS06490 WP_058386452.1 1322127..1323077(-) (ceuB) [Planococcus kocurii strain ATCC 43650]
MKKRYLIPTLIILSIISLFVGVSSISVADLLDFQSEETQIFLISRLPRLVAILLAGAGMSMAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLLFANATMLEKMTVAFAFALAGTFLFMQILNRIKFKDAIFIPLVGLMFGNILSSITTFFAYRADVI
QNMSAWLQGDFSMVMKGSYELLYISVPVFIIAYLYANRFTVAGMGEDFSKNLGMKYRSVVNIGLTLVALITATVVLTVGV
IPFLGLIIPNIVSIFKGDHLQKTLPHTAMLGAIFLLVCDILGRVLIYPYEISISLMVGVIGSFIFLFLLFRRKTYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=163642 AUO94_RS06490 WP_058386452.1 1322127..1323077(-) (ceuB) [Planococcus kocurii strain ATCC 43650]
GTGAAGAAGCGTTACTTAATACCAACATTAATCATACTGTCGATCATTTCCTTGTTTGTCGGAGTGAGCAGTATCAGTGT
AGCTGATTTGCTTGATTTCCAATCGGAAGAGACACAGATATTCTTGATCAGCCGACTGCCAAGGTTGGTCGCGATTTTGC
TGGCAGGTGCAGGGATGAGTATGGCAGGACTCATCATGCAGCAGTTAAGCCGCAATAAGTTCGTGTCTCCGACAACGGCA
GGTACATTAGACGCCACACGGCTTGGGATTCTAGTATCGATGCTATTATTTGCAAATGCAACGATGCTAGAAAAAATGAC
AGTGGCTTTTGCTTTTGCGCTTGCCGGTACGTTTCTTTTTATGCAAATACTAAACCGCATCAAATTTAAAGATGCGATAT
TCATACCGTTAGTCGGTTTAATGTTCGGGAACATCCTGTCTTCGATTACAACGTTTTTCGCTTACCGAGCGGATGTAATT
CAAAACATGTCCGCTTGGTTACAAGGTGACTTTTCGATGGTCATGAAAGGAAGTTATGAACTTCTCTACATCAGTGTTCC
GGTTTTTATCATCGCTTATTTGTACGCTAACCGCTTTACAGTGGCAGGTATGGGTGAGGATTTCTCTAAAAACTTAGGGA
TGAAATACCGGAGTGTTGTCAACATCGGATTGACACTCGTAGCCTTAATTACAGCGACGGTTGTCTTGACGGTAGGGGTT
ATCCCATTTCTTGGGTTGATCATTCCGAACATTGTATCGATCTTCAAAGGAGATCATCTACAAAAAACATTGCCACATAC
GGCAATGCTTGGCGCAATTTTCTTGCTGGTGTGCGATATCTTGGGAAGAGTCTTAATTTATCCATACGAGATTTCCATCA
GCTTGATGGTTGGCGTGATTGGAAGCTTTATTTTCCTCTTCTTGTTGTTTAGGAGGAAAACGTATGCGTGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.994

99.051

0.535

Multiple sequence alignment