Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AUO94_RS00970 Genome accession   NZ_CP013661
Coordinates   191797..193494 (-) Length   565 a.a.
NCBI ID   WP_058385496.1    Uniprot ID   -
Organism   Planococcus kocurii strain ATCC 43650     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 186797..198494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUO94_RS00950 (AUO94_09280) - 187175..189223 (-) 2049 WP_058386913.1 sigma-54 interaction domain-containing protein -
  AUO94_RS00955 (AUO94_09285) - 189349..189582 (+) 234 WP_058386914.1 DUF2627 domain-containing protein -
  AUO94_RS00960 (AUO94_09290) - 189594..190319 (-) 726 WP_058385494.1 glycerophosphodiester phosphodiesterase -
  AUO94_RS17320 - 190585..190761 (-) 177 WP_169793152.1 hypothetical protein -
  AUO94_RS00965 (AUO94_09295) spo0A 190940..191707 (-) 768 WP_058385495.1 sporulation transcription factor Spo0A -
  AUO94_RS00970 (AUO94_09300) recN 191797..193494 (-) 1698 WP_058385496.1 DNA repair protein RecN Machinery gene
  AUO94_RS00975 (AUO94_09305) ahrC 193511..193960 (-) 450 WP_058385497.1 transcriptional regulator AhrC/ArgR -
  AUO94_RS00980 (AUO94_09310) - 194057..194875 (-) 819 WP_179946129.1 TlyA family RNA methyltransferase -
  AUO94_RS00985 (AUO94_09315) dxs 194875..196779 (-) 1905 WP_058386915.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AUO94_RS00990 (AUO94_09320) - 196872..197753 (-) 882 WP_058385499.1 polyprenyl synthetase family protein -
  AUO94_RS00995 (AUO94_09325) xseB 197750..197986 (-) 237 WP_058385500.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63622.33 Da        Isoelectric Point: 4.9958

>NTDB_id=163632 AUO94_RS00970 WP_058385496.1 191797..193494(-) (recN) [Planococcus kocurii strain ATCC 43650]
MLRELDIRNFAIIDALTVSFSEGLTVLTGETGAGKSIIIDAVHLLAGGRGSQEFIRHGAKKAEIEGLFSLENEQHPVFRR
LEEFGITWSDGDILLRRELNDKGKNVCRINGKLVTISILREVGASLIDIHGQHETQELMDEKQHLYLLDQFAGKSLAKSK
ESYSHTFDKYTKLKREFSSYTENEQQIAQRIDLLTFQLQEIEAAELVIGEEEEFIQERKKLQNFNKIYESISAAHEAIQG
ESKGLDWIGSAMSELEHAAAVDETFIGSSETLSGAFYLIQDTGTEIKRILDDMEFDPGRLNEIEQRLAVIQSLKRKYGTS
VEDILLYHEKQTDELDKLVNRDQRYQLDQEKLKELTEDLRVEAEELTILRKKAAKSLGKAIMEQLKELHMAKASFEVNFT
VLPSGRFDRHGHDAITFYISTNLGEPLKPLTKVASGGELSRMMLALKTIFSEHQGITSIIFDEVDTGVSGRVAQAIAEKI
AAISVDSQVLCISHLPQVAAMADQHLFIEKKVDKQRTTTAVTELNGRERTEEMSRMLSGAEITDLTLQHAEELLSLAADR
KLLMK

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=163632 AUO94_RS00970 WP_058385496.1 191797..193494(-) (recN) [Planococcus kocurii strain ATCC 43650]
ATGCTTCGGGAGTTAGATATACGCAATTTTGCTATTATTGATGCTTTGACAGTTAGCTTTTCTGAAGGATTGACTGTTTT
GACTGGAGAAACCGGAGCCGGTAAATCCATTATTATCGATGCGGTTCATCTTTTAGCAGGTGGACGAGGAAGCCAAGAAT
TTATTCGTCATGGCGCTAAAAAGGCAGAAATCGAAGGCTTGTTTTCATTAGAAAATGAACAACACCCGGTATTTCGCAGA
TTAGAGGAATTCGGTATCACTTGGAGTGATGGCGATATTTTGTTGCGCAGAGAATTAAATGATAAAGGCAAAAATGTCTG
TCGAATAAATGGTAAACTCGTTACCATTTCTATTTTACGTGAAGTTGGAGCTTCTCTAATTGATATTCACGGCCAACACG
AAACACAGGAATTGATGGATGAAAAACAGCATCTTTACTTGCTCGATCAGTTTGCCGGTAAAAGCTTAGCGAAGTCAAAA
GAAAGCTATAGCCACACATTTGATAAGTACACAAAATTAAAGCGAGAGTTTTCTTCTTATACTGAAAATGAGCAGCAAAT
TGCACAGCGTATTGATTTATTGACTTTCCAACTGCAAGAAATCGAAGCAGCGGAGTTGGTTATAGGAGAAGAAGAAGAAT
TTATTCAAGAACGTAAAAAATTACAAAATTTTAATAAGATATACGAGTCAATTTCTGCGGCGCACGAAGCAATTCAAGGA
GAAAGCAAAGGACTGGATTGGATTGGATCCGCTATGTCTGAACTTGAACATGCAGCAGCAGTAGATGAAACTTTTATAGG
GTCCTCTGAAACTTTATCCGGTGCTTTTTATTTAATCCAAGATACCGGTACGGAAATCAAGCGAATTTTAGATGATATGG
AATTCGATCCGGGTAGATTAAATGAAATCGAGCAACGTTTAGCTGTTATTCAATCGCTAAAAAGAAAATACGGGACTTCT
GTAGAAGACATTTTGCTGTATCATGAAAAGCAGACAGATGAATTGGATAAATTGGTCAACCGAGATCAGCGTTATCAATT
AGATCAAGAAAAGTTAAAAGAATTAACTGAGGATTTGCGTGTGGAAGCGGAAGAGTTAACGATTCTTCGCAAAAAAGCAG
CGAAAAGCCTAGGCAAAGCGATTATGGAGCAGTTAAAAGAATTACATATGGCAAAGGCATCGTTTGAAGTAAACTTTACC
GTGTTGCCAAGCGGTCGATTTGATCGTCATGGTCATGATGCAATTACTTTTTACATTTCAACAAATCTTGGCGAACCGTT
GAAACCTTTAACTAAAGTAGCATCCGGCGGGGAATTGTCCCGCATGATGTTGGCACTAAAAACCATCTTCTCTGAGCATC
AAGGCATAACTTCCATTATATTCGACGAAGTGGATACAGGTGTTAGCGGTCGAGTGGCTCAGGCTATTGCTGAGAAAATT
GCTGCTATCTCAGTCGATTCTCAAGTGCTTTGTATTTCCCATTTGCCTCAAGTAGCGGCGATGGCAGATCAGCATTTGTT
TATTGAGAAAAAAGTCGACAAGCAACGAACAACCACTGCGGTGACCGAGCTTAATGGAAGAGAGCGGACGGAAGAAATGA
GTCGTATGCTGTCAGGAGCTGAAATAACAGATCTGACTTTGCAACATGCGGAAGAATTGTTATCACTCGCGGCAGACCGT
AAACTATTGATGAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.281

100

0.527

Multiple sequence alignment