Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AUC31_RS06290 Genome accession   NZ_CP013659
Coordinates   1291343..1293040 (+) Length   565 a.a.
NCBI ID   WP_058380869.1    Uniprot ID   A0A0U2ZDZ1
Organism   Planococcus rifietoensis strain M8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1286343..1298040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUC31_RS06265 (AUC31_02340) xseB 1286741..1286977 (+) 237 WP_058380874.1 exodeoxyribonuclease VII small subunit -
  AUC31_RS06270 (AUC31_02335) - 1286974..1287852 (+) 879 WP_058380873.1 polyprenyl synthetase family protein -
  AUC31_RS06275 (AUC31_02330) dxs 1287947..1289857 (+) 1911 WP_058380872.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AUC31_RS06280 (AUC31_02325) - 1289854..1290699 (+) 846 WP_058380871.1 TlyA family RNA methyltransferase -
  AUC31_RS06285 (AUC31_02320) ahrC 1290875..1291324 (+) 450 WP_058380870.1 transcriptional regulator AhrC/ArgR -
  AUC31_RS06290 (AUC31_02315) recN 1291343..1293040 (+) 1698 WP_058380869.1 DNA repair protein RecN Machinery gene
  AUC31_RS06295 (AUC31_02310) spo0A 1293074..1293826 (+) 753 WP_058380868.1 sporulation transcription factor Spo0A -
  AUC31_RS06300 (AUC31_02305) - 1294026..1294757 (+) 732 WP_058380867.1 glycerophosphodiester phosphodiesterase -
  AUC31_RS06305 (AUC31_02300) - 1294828..1295064 (-) 237 WP_058380866.1 DUF2627 domain-containing protein -
  AUC31_RS06310 (AUC31_02295) - 1295193..1297235 (+) 2043 WP_058380865.1 sigma-54 interaction domain-containing protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63732.80 Da        Isoelectric Point: 5.7554

>NTDB_id=163602 AUC31_RS06290 WP_058380869.1 1291343..1293040(+) (recN) [Planococcus rifietoensis strain M8]
MLRELDIRNFAIIDTLSVSFTEGMTVLTGETGAGKSIIIDAVHLLAGGRGSQEFIRHGAQKAEIEGLFQIESEKHPVHKK
LEDFGIQASDGDVLLRRELNGKGKNVCRINGKLVTISILREVGAALIDIHGQHETQELMDEKQHLHLLDQFAGKLLTKAK
EGYSHTFEKYTKLKREFASYNENEQQIAQRIDLLTFQLREIEEAQLVPGEEETLLEERKRLQNFTKIFESISQAHEAIQG
ESKGLDWVGNAMSELEHAAAVDEQFQEASESVAGAFYQLQDTSTEIKRILDQLEFDPERLNEIEQRLALLQSLKRKYGAS
VEDMLLYQEEQADELDKLLNRDQRLRLDQEKLKELTEDLRIEAEELTMLRKQAAAKLSKAIMEQLKELHMGKASFSVQFN
LLPKGKFDRFGQDSIAFHISTNVGEPLKPLTKVASGGELSRMMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
AAIARHSQVLCISHLPQVAAMADQHLFIEKKVSKDRTTTSVKELAGRKRTEEMSRMLSGAEITELTLQHADELLTLARDR
KLLMK

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=163602 AUC31_RS06290 WP_058380869.1 1291343..1293040(+) (recN) [Planococcus rifietoensis strain M8]
ATGCTGCGAGAATTGGATATCCGCAATTTTGCGATTATCGATACATTATCGGTCAGTTTTACAGAAGGCATGACAGTTCT
GACAGGGGAAACCGGTGCCGGGAAGTCGATCATCATCGATGCCGTGCACTTACTAGCCGGAGGGCGAGGAAGCCAGGAAT
TCATTCGCCACGGGGCCCAAAAAGCTGAAATCGAAGGCTTGTTCCAGATCGAGAGCGAAAAGCATCCAGTCCATAAAAAA
CTGGAGGATTTCGGGATTCAGGCGAGCGACGGGGATGTTTTGCTGCGCCGCGAGCTGAATGGCAAAGGAAAAAACGTTTG
CCGCATCAATGGTAAACTGGTGACCATTTCCATTTTGCGTGAAGTGGGGGCCGCGTTGATCGATATCCATGGCCAGCACG
AGACGCAGGAATTGATGGATGAAAAGCAGCATCTTCATCTATTGGATCAATTTGCCGGGAAACTTCTAACCAAAGCCAAA
GAAGGCTATAGCCATACATTTGAAAAATACACGAAATTAAAGCGTGAATTTGCCAGCTATAATGAAAACGAACAGCAGAT
CGCACAGCGCATCGACTTGCTGACGTTCCAATTGCGTGAAATCGAAGAAGCCCAGCTCGTGCCTGGGGAAGAAGAAACTT
TGCTGGAAGAACGCAAGCGACTGCAGAATTTCACCAAAATCTTCGAGTCGATTTCACAAGCCCATGAAGCGATTCAAGGG
GAGTCGAAGGGGCTCGATTGGGTCGGCAATGCGATGAGCGAACTTGAACACGCAGCAGCAGTCGATGAGCAGTTCCAAGA
AGCGTCGGAATCGGTTGCCGGGGCCTTTTATCAACTTCAGGACACGTCAACTGAAATCAAGCGCATTTTGGACCAGCTGG
AGTTCGACCCGGAACGGCTTAATGAAATCGAACAGCGCCTGGCATTATTGCAATCCTTGAAGCGCAAATACGGCGCATCG
GTTGAGGACATGTTGTTGTATCAGGAAGAGCAAGCGGACGAGCTCGATAAATTGCTCAACCGCGACCAACGCCTGCGCCT
TGACCAGGAGAAACTGAAGGAATTGACCGAGGATTTGCGCATCGAAGCGGAAGAACTAACGATGCTGAGAAAACAAGCGG
CAGCCAAATTATCGAAAGCGATCATGGAACAGTTAAAAGAGCTCCATATGGGTAAAGCCTCGTTTTCGGTGCAATTCAAC
TTGCTGCCAAAAGGCAAATTCGACCGTTTCGGCCAGGACAGCATCGCATTCCATATTTCGACGAATGTCGGGGAGCCGTT
AAAGCCGCTGACAAAAGTCGCATCAGGCGGTGAATTGTCGCGCATGATGCTCGCATTGAAGACAATTTTTTCCAAGCACC
AAGGCATCACATCGATCATTTTCGATGAAGTCGATACGGGAGTCAGCGGGCGTGTAGCGCAGGCGATTGCCGAGAAAATC
GCTGCCATTGCCCGCCATTCCCAAGTGCTGTGCATTTCCCATTTGCCTCAAGTCGCAGCCATGGCAGATCAGCATCTGTT
TATCGAGAAAAAAGTATCAAAAGACCGCACGACCACATCGGTGAAAGAACTGGCAGGGCGCAAGCGCACTGAAGAAATGA
GCCGTATGCTGTCAGGGGCGGAAATCACCGAATTGACCTTGCAGCATGCTGATGAATTACTGACTTTGGCGAGGGACCGG
AAGCTGTTGATGAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U2ZDZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.754

100

0.522

Multiple sequence alignment