Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AUC31_RS00680 Genome accession   NZ_CP013659
Coordinates   136617..137567 (+) Length   316 a.a.
NCBI ID   WP_058381854.1    Uniprot ID   -
Organism   Planococcus rifietoensis strain M8     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 131617..142567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUC31_RS00660 (AUC31_07935) - 132793..133506 (+) 714 WP_058381858.1 VOC family protein -
  AUC31_RS00665 (AUC31_07930) hflX 133612..134883 (+) 1272 WP_058381857.1 GTPase HflX -
  AUC31_RS00670 (AUC31_07925) - 135040..135915 (+) 876 WP_058381856.1 DUF6612 family protein -
  AUC31_RS00680 (AUC31_07915) ceuB 136617..137567 (+) 951 WP_058381854.1 ABC transporter permease Machinery gene
  AUC31_RS00685 (AUC31_07910) - 137560..138510 (+) 951 WP_058381853.1 iron chelate uptake ABC transporter family permease subunit -
  AUC31_RS00690 (AUC31_07905) - 138507..139268 (+) 762 WP_058381852.1 ABC transporter ATP-binding protein -
  AUC31_RS00695 (AUC31_07900) - 139404..140051 (+) 648 WP_058381851.1 phosphatase PAP2 family protein -
  AUC31_RS00700 (AUC31_07895) - 140142..141425 (-) 1284 WP_058381850.1 ammonium transporter -
  AUC31_RS00705 (AUC31_07890) - 141438..141779 (-) 342 WP_058381849.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34922.30 Da        Isoelectric Point: 10.1518

>NTDB_id=163591 AUC31_RS00680 WP_058381854.1 136617..137567(+) (ceuB) [Planococcus rifietoensis strain M8]
MKKRILIPILILLSFISLFVGVSSISPLDLLDFQSEETQIFLVSRFPRLVAILLAGAGMSMAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLLFANASMIEKMAVAFLFALAGTFLFMQILNRIKFKDAIFIPLIGLMFGNILSSITTFFAYRADVI
QNMSAWLQGDFSMVMKGSYELLYISVPVFIIAYMYANRFTVAGMGEDFSKNLGLKYRSVVNIGLTLVALITATVVLTVGM
IPFLGLIIPNIVSIFKGDHLQKTLPHTAMLGAIFLLVCDILGRVLIYPYEITISLMVGVIGSFIFLIMLFRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=163591 AUC31_RS00680 WP_058381854.1 136617..137567(+) (ceuB) [Planococcus rifietoensis strain M8]
ATGAAAAAACGTATTCTAATACCCATATTGATCCTTCTGTCGTTCATCTCCCTGTTTGTCGGAGTCAGCAGCATTAGCCC
GCTGGATCTCCTTGATTTTCAATCGGAAGAAACACAGATTTTCCTCGTCAGCCGTTTTCCGCGACTTGTCGCAATTTTAC
TTGCGGGGGCTGGCATGAGCATGGCGGGGCTTATCATGCAGCAATTGAGCCGTAATAAATTCGTCTCGCCAACGACTGCC
GGGACGCTCGATGCAACGCGCCTCGGGATTCTTGTTTCGATGCTGTTGTTTGCGAACGCTTCGATGATCGAGAAAATGGC
TGTGGCGTTCTTGTTCGCACTCGCCGGCACTTTCTTATTCATGCAAATTCTCAACCGCATCAAATTCAAGGATGCCATCT
TCATTCCGTTGATCGGCTTGATGTTCGGCAATATCCTGTCATCGATCACAACATTTTTTGCCTACCGGGCAGACGTCATC
CAGAATATGTCGGCTTGGCTCCAGGGTGATTTTTCGATGGTCATGAAAGGCAGTTATGAACTTCTTTACATAAGTGTACC
GGTCTTCATCATCGCCTATATGTACGCCAACCGCTTTACAGTCGCAGGGATGGGTGAGGATTTCTCGAAAAACTTGGGGC
TGAAATACCGCAGTGTCGTCAATATCGGCTTGACCTTAGTGGCGCTTATTACCGCGACCGTGGTTTTGACCGTCGGCATG
ATTCCGTTTCTCGGCTTGATCATCCCGAATATCGTCTCCATCTTTAAGGGGGACCATCTCCAGAAAACCTTGCCGCATAC
CGCGATGCTTGGCGCCATCTTCCTATTGGTTTGTGACATTCTCGGGCGCGTCTTGATTTATCCGTACGAGATCACGATCA
GCCTGATGGTGGGCGTTATCGGAAGCTTTATCTTCCTGATCATGTTGTTTAGGAGGAAGGCGTATGCGTGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.994

99.051

0.535

Multiple sequence alignment