Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AT706_RS16600 Genome accession   NZ_CP013654
Coordinates   3249648..3250097 (+) Length   149 a.a.
NCBI ID   WP_014475770.1    Uniprot ID   A0A0D1KPR3
Organism   Bacillus subtilis subsp. subtilis strain BSD-2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3244648..3255097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT706_RS16580 (AT706_16585) hxlR 3245861..3246223 (-) 363 WP_015482783.1 transcriptional activator HxlR -
  AT706_RS16585 (AT706_16590) hxlA 3246455..3247087 (+) 633 WP_015482782.1 3-hexulose-6-phosphate synthase -
  AT706_RS16590 (AT706_16595) hxlB 3247093..3247650 (+) 558 WP_015482781.1 6-phospho-3-hexuloisomerase -
  AT706_RS16595 (AT706_16600) tlpC 3247761..3249482 (+) 1722 WP_041517645.1 methyl-accepting chemotaxis protein TlpC -
  AT706_RS16600 (AT706_16605) nucA/comI 3249648..3250097 (+) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  AT706_RS16605 (AT706_16610) nin/comJ 3250124..3250522 (+) 399 WP_015382736.1 DNA-entry nuclease inhibitor Regulator
  AT706_RS16610 (AT706_16615) bglC 3250559..3251992 (-) 1434 WP_015382735.1 6-phospho-beta-glucosidase -
  AT706_RS16615 (AT706_16620) yckD 3252145..3252477 (-) 333 WP_015252849.1 YckD family protein -
  AT706_RS16620 (AT706_16625) yckC 3252559..3252990 (-) 432 WP_046340202.1 RDD family protein -
  AT706_RS21370 - 3253040..3253237 (-) 198 WP_144052033.1 hypothetical protein -
  AT706_RS16630 (AT706_16635) yckB 3253399..3254262 (+) 864 WP_015482776.1 transporter substrate-binding domain-containing protein -
  AT706_RS16635 (AT706_16640) yckA 3254272..3254952 (+) 681 WP_015382730.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16440.39 Da        Isoelectric Point: 4.5282

>NTDB_id=163555 AT706_RS16600 WP_014475770.1 3249648..3250097(+) (nucA/comI) [Bacillus subtilis subsp. subtilis strain BSD-2]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=163555 AT706_RS16600 WP_014475770.1 3249648..3250097(+) (nucA/comI) [Bacillus subtilis subsp. subtilis strain BSD-2]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGTCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGATATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KPR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

98.658

100

0.987

Multiple sequence alignment