Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   AT706_RS12945 Genome accession   NZ_CP013654
Coordinates   2526257..2526835 (-) Length   192 a.a.
NCBI ID   WP_015483050.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BSD-2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2521257..2531835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT706_RS12910 (AT706_12915) lepB 2521261..2521767 (-) 507 WP_003233128.1 signal peptidase I -
  AT706_RS12915 (AT706_12920) yhjE 2521769..2522392 (-) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  AT706_RS12920 (AT706_12925) - 2522544..2522915 (+) 372 WP_015383278.1 hypothetical protein -
  AT706_RS12925 (AT706_12930) yhjC 2523114..2523314 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  AT706_RS12930 (AT706_12935) yhjB 2523311..2524780 (+) 1470 WP_015383277.1 sodium:solute symporter family protein -
  AT706_RS12935 (AT706_12940) yhjA 2524824..2525093 (-) 270 WP_015483052.1 excalibur calcium-binding domain-containing protein -
  AT706_RS12940 (AT706_12945) yhxD 2525311..2526210 (+) 900 WP_015483051.1 SDR family oxidoreductase -
  AT706_RS12945 (AT706_12950) comK 2526257..2526835 (-) 579 WP_015483050.1 competence transcription factor ComK Regulator
  AT706_RS12950 (AT706_12955) yhzC 2527128..2527361 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  AT706_RS12955 (AT706_12960) yhxC 2527389..2528246 (-) 858 WP_015483049.1 SDR family oxidoreductase -
  AT706_RS12960 (AT706_12965) comW 2528358..2529887 (+) 1530 WP_015483048.1 FAD-dependent oxidoreductase -
  AT706_RS21895 hemAT 2530143..2530520 (+) 378 Protein_2569 heme-based aerotactic transducer HemAT -
  AT706_RS21900 - 2530527..2531324 (+) 798 WP_404840991.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22388.59 Da        Isoelectric Point: 7.2635

>NTDB_id=163545 AT706_RS12945 WP_015483050.1 2526257..2526835(-) (comK) [Bacillus subtilis subsp. subtilis strain BSD-2]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
SVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=163545 AT706_RS12945 WP_015483050.1 2526257..2526835(-) (comK) [Bacillus subtilis subsp. subtilis strain BSD-2]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTTGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
AGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

98.958

100

0.99

Multiple sequence alignment