Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   AT706_RS11000 Genome accession   NZ_CP013654
Coordinates   2171737..2172201 (+) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis subsp. subtilis strain BSD-2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2166737..2177201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT706_RS10980 (AT706_10985) fadH 2167925..2168689 (-) 765 WP_015383534.1 2,4-dienoyl-CoA reductase -
  AT706_RS10985 (AT706_10990) ppeE 2168832..2169692 (+) 861 WP_015483175.1 metallophosphoesterase -
  AT706_RS10990 (AT706_10995) ltdD 2169749..2170243 (+) 495 WP_080030726.1 L,D-transpeptidase family protein -
  AT706_RS10995 (AT706_11000) ykuC 2170319..2171611 (+) 1293 WP_014479656.1 MFS transporter -
  AT706_RS11000 (AT706_11005) kre 2171737..2172201 (+) 465 WP_003232406.1 YkyB family protein Regulator
  AT706_RS11005 (AT706_11010) cheV 2172245..2173156 (-) 912 WP_014476655.1 chemotaxis protein CheV -
  AT706_RS11010 (AT706_11015) - 2173360..2173521 (+) 162 WP_003245246.1 hypothetical protein -
  AT706_RS11015 (AT706_11020) dapX 2173723..2174904 (+) 1182 WP_015252196.1 aminotransferase A -
  AT706_RS11020 (AT706_11025) kinA 2174914..2176734 (-) 1821 WP_015483173.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=163533 AT706_RS11000 WP_003232406.1 2171737..2172201(+) (kre) [Bacillus subtilis subsp. subtilis strain BSD-2]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=163533 AT706_RS11000 WP_003232406.1 2171737..2172201(+) (kre) [Bacillus subtilis subsp. subtilis strain BSD-2]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment