Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AT706_RS10775 Genome accession   NZ_CP013654
Coordinates   2131962..2132240 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis subsp. subtilis strain BSD-2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2126962..2137240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT706_RS10755 (AT706_10760) ade 2127026..2128759 (-) 1734 WP_015383561.1 adenine deaminase -
  AT706_RS10760 (AT706_10765) ktrC 2128915..2129580 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  AT706_RS10765 (AT706_10770) ykqA 2129643..2130470 (-) 828 WP_015483181.1 gamma-glutamylcyclotransferase -
  AT706_RS10770 (AT706_10775) kinC 2130486..2131772 (-) 1287 WP_015383559.1 two-component sensor histidine kinase KinC -
  AT706_RS10775 (AT706_10780) abrB 2131962..2132240 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  AT706_RS10780 (AT706_10785) mreBH 2132524..2133531 (+) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  AT706_RS10785 (AT706_10790) ykpC 2133632..2133766 (+) 135 WP_003238865.1 protein YkpC -
  AT706_RS10790 (AT706_10795) ampS 2133876..2135108 (+) 1233 WP_015383558.1 aminopeptidase -
  AT706_RS10795 (AT706_10800) panEB 2135142..2136053 (-) 912 Protein_2139 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=163531 AT706_RS10775 WP_003244728.1 2131962..2132240(-) (abrB) [Bacillus subtilis subsp. subtilis strain BSD-2]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=163531 AT706_RS10775 WP_003244728.1 2131962..2132240(-) (abrB) [Bacillus subtilis subsp. subtilis strain BSD-2]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment