Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   A6L50_RS07340 Genome accession   NZ_CP016680
Coordinates   1397234..1397740 (+) Length   168 a.a.
NCBI ID   WP_002258727.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22822     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1392234..1402740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L50_RS07310 (A6L50_07310) - 1392244..1393779 (+) 1536 WP_002258724.1 sodium-dependent transporter -
  A6L50_RS12695 - 1393776..1393868 (+) 93 WP_002233157.1 methionine/alanine import family NSS transporter small subunit -
  A6L50_RS07315 (A6L50_07315) lysA 1393928..1395148 (-) 1221 WP_002258725.1 diaminopimelate decarboxylase -
  A6L50_RS07320 (A6L50_07320) lptM 1395159..1395329 (-) 171 WP_002218098.1 LPS translocon maturation chaperone LptM -
  A6L50_RS07325 (A6L50_07325) cyaY 1395401..1395724 (+) 324 WP_002219897.1 iron donor protein CyaY -
  A6L50_RS07330 (A6L50_07330) - 1395751..1396767 (+) 1017 WP_002219898.1 YeiH family protein -
  A6L50_RS07335 (A6L50_07335) - 1396793..1397212 (+) 420 WP_002219899.1 DUF2251 domain-containing protein -
  A6L50_RS07340 (A6L50_07340) luxS 1397234..1397740 (+) 507 WP_002258727.1 S-ribosylhomocysteine lyase Regulator
  A6L50_RS07345 (A6L50_07345) polA 1397886..1400681 (+) 2796 WP_002237359.1 DNA polymerase I -
  A6L50_RS07350 (A6L50_07350) - 1401408..1402415 (-) 1008 WP_002237360.1 IS5 family transposase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18697.44 Da        Isoelectric Point: 5.5451

>NTDB_id=163529 A6L50_RS07340 WP_002258727.1 1397234..1397740(+) (luxS) [Neisseria meningitidis strain M22822]
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCIPNKEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMQDVANVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLARKVAVNKNEELT
LDEGLLNA

Nucleotide


Download         Length: 507 bp        

>NTDB_id=163529 A6L50_RS07340 WP_002258727.1 1397234..1397740(+) (luxS) [Neisseria meningitidis strain M22822]
ATGCCCCTACTAGACAGTTTCAAAGTCGATCACACCCGTATGCACGCCCCCGCCGTACGCGTGGCGAAAACCATGACCAC
GCCCAAAGGCGACACCATTACCGTGTTTGACCTGCGTTTCTGCATTCCCAACAAAGAAATCCTGCCCGAAAAAGGCATCC
ACACGCTGGAGCATTTGTTCGCCGGTTTTATGCGCGATCACTTGAACGGCAACGGCGTGGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACAGGTTTCTACATGAGCCTCATCGGTACGCCTTCCGAACAGCAGGTCGCCGATGCGTGGCTGGCTTC
GATGCAGGATGTGGCCAATGTCAAAGACCAAAGCAAAATCCCCGAGTTGAACGAATACCAATGCGGCACTTACCAAATGC
ACTCGCTCGCCGAAGCGCAACAAATCGCGCAAAACGTGTTGGCGCGCAAAGTGGCGGTGAACAAAAATGAAGAGCTGACG
CTGGATGAAGGGCTGCTGAACGCCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

76.647

99.405

0.762

Multiple sequence alignment