Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AT706_RS07605 Genome accession   NZ_CP013654
Coordinates   1449992..1450612 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BSD-2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1444992..1455612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT706_RS07585 (AT706_07595) dnaD 1445277..1445975 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  AT706_RS07590 (AT706_07600) nth 1445994..1446653 (+) 660 WP_015483371.1 endonuclease III -
  AT706_RS07595 (AT706_07605) ypoC 1446650..1447144 (+) 495 WP_015383948.1 YpoC family protein -
  AT706_RS07600 (AT706_07610) ponA 1447220..1449970 (-) 2751 WP_015383947.1 transglycosylase domain-containing protein -
  AT706_RS07605 (AT706_07615) recU 1449992..1450612 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  AT706_RS07610 (AT706_07620) yppC 1450653..1451615 (+) 963 WP_015383945.1 DUF2515 domain-containing protein -
  AT706_RS07615 (AT706_07625) sspM 1451640..1451744 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  AT706_RS07620 (AT706_07630) yppD 1451942..1452187 (+) 246 WP_004398488.1 YppD family protein -
  AT706_RS07625 (AT706_07635) yppE 1452233..1452604 (+) 372 WP_015483369.1 YppE family protein -
  AT706_RS07630 (AT706_07640) yppF 1452643..1452831 (-) 189 WP_003230690.1 YppF family protein -
  AT706_RS07635 (AT706_07645) sppG 1453018..1453395 (+) 378 WP_014477159.1 YppG family protein -
  AT706_RS07640 (AT706_07650) ypqA 1453416..1453835 (-) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  AT706_RS07645 (AT706_07655) ptsA 1453973..1454479 (+) 507 WP_015483368.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=163527 AT706_RS07605 WP_004399067.1 1449992..1450612(-) (recU) [Bacillus subtilis subsp. subtilis strain BSD-2]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=163527 AT706_RS07605 WP_004399067.1 1449992..1450612(-) (recU) [Bacillus subtilis subsp. subtilis strain BSD-2]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment