Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   AT706_RS06620 Genome accession   NZ_CP013654
Coordinates   1273914..1274717 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BSD-2     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1268914..1279717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT706_RS06595 (AT706_06600) yqxC 1269035..1269880 (+) 846 WP_015384068.1 TlyA family RNA methyltransferase -
  AT706_RS06600 (AT706_06605) argR 1269978..1270427 (+) 450 WP_015384067.1 arginine repressor ArgR -
  AT706_RS06605 (AT706_06610) recN 1270464..1272194 (+) 1731 WP_014477300.1 DNA repair protein RecN Machinery gene
  AT706_RS06610 (AT706_06615) spoIVB 1272369..1273649 (+) 1281 WP_004398697.1 SpoIVB peptidase -
  AT706_RS06620 (AT706_06625) spo0A 1273914..1274717 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  AT706_RS06630 (AT706_06635) yqiG 1275183..1276301 (-) 1119 WP_015483421.1 NADH-dependent flavin oxidoreductase -
  AT706_RS21255 (AT706_06640) - 1276374..1276526 (-) 153 WP_015384065.1 hypothetical protein -
  AT706_RS06640 (AT706_06645) - 1276834..1277130 (+) 297 WP_015384064.1 hypothetical protein -
  AT706_RS06645 (AT706_06650) yqiI 1277150..1277770 (+) 621 WP_072173938.1 N-acetylmuramoyl-L-alanine amidase family protein -
  AT706_RS06650 (AT706_06655) glpQB 1277843..1278574 (+) 732 WP_015384062.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=163526 AT706_RS06620 WP_003226427.1 1273914..1274717(+) (spo0A) [Bacillus subtilis subsp. subtilis strain BSD-2]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=163526 AT706_RS06620 WP_003226427.1 1273914..1274717(+) (spo0A) [Bacillus subtilis subsp. subtilis strain BSD-2]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGTTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTCAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment