Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AT706_RS06090 Genome accession   NZ_CP013654
Coordinates   1184069..1184836 (+) Length   255 a.a.
NCBI ID   WP_015384118.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BSD-2     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1179069..1189836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT706_RS06060 (AT706_06065) pgpH 1179365..1181500 (+) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -
  AT706_RS06065 (AT706_06070) ybeY 1181501..1181974 (+) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  AT706_RS06070 (AT706_06075) unpK 1181955..1182326 (+) 372 WP_015384119.1 diacylglycerol kinase family protein -
  AT706_RS06075 (AT706_06080) - 1182445..1182855 (+) 411 WP_003230049.1 cytidine deaminase -
  AT706_RS06080 (AT706_06085) era 1182836..1183741 (+) 906 WP_003230051.1 GTPase Era -
  AT706_RS06085 (AT706_06090) yqzL 1183889..1184032 (+) 144 WP_003230053.1 YqzL family protein -
  AT706_RS06090 (AT706_06095) recO 1184069..1184836 (+) 768 WP_015384118.1 DNA repair protein RecO Machinery gene
  AT706_RS06095 (AT706_06100) glyQ 1185134..1186021 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  AT706_RS06100 (AT706_06105) glyS 1186014..1188053 (+) 2040 WP_015384117.1 glycine--tRNA ligase subunit beta -
  AT706_RS06105 (AT706_06110) ccpN 1188186..1188824 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  AT706_RS06110 (AT706_06115) ppsR 1188850..1189662 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29332.01 Da        Isoelectric Point: 8.3080

>NTDB_id=163515 AT706_RS06090 WP_015384118.1 1184069..1184836(+) (recO) [Bacillus subtilis subsp. subtilis strain BSD-2]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKSNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=163515 AT706_RS06090 WP_015384118.1 1184069..1184836(+) (recO) [Bacillus subtilis subsp. subtilis strain BSD-2]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTATTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGTC
AAATCCTTATTTATTTGAATTCATACTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment