Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   AT706_RS04885 Genome accession   NZ_CP013654
Coordinates   968819..969565 (+) Length   248 a.a.
NCBI ID   WP_015384274.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BSD-2     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 963819..974565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT706_RS04870 (AT706_04875) - 964046..964237 (-) 192 WP_003222590.1 hypothetical protein -
  AT706_RS04875 (AT706_04880) valS 964685..967327 (+) 2643 WP_015483523.1 valine--tRNA ligase -
  AT706_RS04880 (AT706_04885) folC 967387..968679 (+) 1293 WP_060588596.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  AT706_RS04885 (AT706_04890) comC 968819..969565 (+) 747 WP_015384274.1 prepilin peptidase Machinery gene
  AT706_RS04890 (AT706_04895) spoIIB 969699..970697 (+) 999 WP_015384273.1 stage II sporulation protein SpoIIB -
  AT706_RS04895 (AT706_04900) maf 970850..971419 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  AT706_RS04900 (AT706_04905) radC 971456..972151 (+) 696 WP_015384272.1 RadC family protein -
  AT706_RS04905 (AT706_04910) mreB 972243..973256 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  AT706_RS04910 (AT706_04915) mreC 973287..974159 (+) 873 WP_003222609.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26378.00 Da        Isoelectric Point: 9.6195

>NTDB_id=163507 AT706_RS04885 WP_015384274.1 968819..969565(+) (comC) [Bacillus subtilis subsp. subtilis strain BSD-2]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLIQKGKCKSCGHMISFMYPAAELVTA
CLFAAAGIRFGTSLELFPALVFISLLIIVAVTDLHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=163507 AT706_RS04885 WP_015384274.1 968819..969565(+) (comC) [Bacillus subtilis subsp. subtilis strain BSD-2]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTAATTCAAAAAGGTAAATGTAAAAGCTGCGGGCATATGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTCTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATCTTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGAGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAGAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(100-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

97.984

100

0.98

Multiple sequence alignment