Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   IJ22_RS11660 Genome accession   NZ_CP013652
Coordinates   2333420..2335120 (-) Length   566 a.a.
NCBI ID   WP_062408928.1    Uniprot ID   -
Organism   Paenibacillus naphthalenovorans strain 32O-Y     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2328420..2340120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IJ22_RS11640 (IJ22_24030) - 2328750..2329460 (-) 711 WP_062408926.1 glycosyltransferase family 2 protein -
  IJ22_RS11645 (IJ22_24040) steA 2329481..2330650 (-) 1170 WP_235594310.1 putative cytokinetic ring protein SteA -
  IJ22_RS11650 (IJ22_24050) spo0A 2330894..2331697 (-) 804 WP_054817761.1 sporulation transcription factor Spo0A -
  IJ22_RS11655 (IJ22_24060) spoIVB 2331939..2333282 (-) 1344 WP_201023633.1 SpoIVB peptidase -
  IJ22_RS11660 (IJ22_24070) recN 2333420..2335120 (-) 1701 WP_062408928.1 DNA repair protein RecN Machinery gene
  IJ22_RS11665 (IJ22_24080) ahrC 2335141..2335590 (-) 450 WP_054817786.1 transcriptional regulator AhrC/ArgR -
  IJ22_RS11670 (IJ22_24090) - 2335620..2336087 (-) 468 WP_062408929.1 hypothetical protein -
  IJ22_RS11675 (IJ22_24110) - 2336158..2337000 (-) 843 WP_062408930.1 TlyA family RNA methyltransferase -
  IJ22_RS11680 (IJ22_24120) dxs 2337018..2338904 (-) 1887 WP_062408931.1 1-deoxy-D-xylulose-5-phosphate synthase -
  IJ22_RS11685 (IJ22_24130) - 2339016..2339921 (-) 906 WP_418007118.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 63544.07 Da        Isoelectric Point: 5.1893

>NTDB_id=163449 IJ22_RS11660 WP_062408928.1 2333420..2335120(-) (recN) [Paenibacillus naphthalenovorans strain 32O-Y]
MLLEMSIRHLAVIEHVELHCKNGFHVLTGETGAGKSIIIDALSLIAGGRTSSDLVRYGSDKATIEAMFGIEPGHPVWAVL
ERLGIEADPEEHLIIRREITAQGKSTSRINGQLVNLAMLKEVGEWLVNIHGQHEHQSLFKVEEHLRWLDLFGEAEIAPAR
QAYQEAYDAYQTIRKQVRELQDTSKQNLQMMDLYRFQVEEIRAAQLKPGEDEALAEEKQKLGNAEKLYSNAADAYDLLYG
GGKGLDSVRRAMQKLQDIAGLDPAKLQSIAEQVQSSYYQLEDAAYQIRDYRDEVEFNPSRLDFIEQRLDTISSLRRKYGD
TVSDILAYGDKIAHELDLIENKDEKLMQLEKQEQAAFAALQRLADDLTGLRKSVADRLSAEIVAELRELHMERTQFQVHF
APVEGRKLTRDGADQVEFLISANPGEPLRSLSKIASGGEISRVMLALKSIFARVDRIPVLVFDEVDTGVSGRAAQAIAEK
MSKLSQSCQVFSITHLPQVACMADAHYRIHKTTDGDRTYTNVDDLGTDERIHELARMLGGVEVTEKTLQHAQEMLALAND
KKARMV

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=163449 IJ22_RS11660 WP_062408928.1 2333420..2335120(-) (recN) [Paenibacillus naphthalenovorans strain 32O-Y]
ATGCTGCTGGAAATGTCCATCCGCCATCTGGCGGTGATAGAACATGTTGAATTGCACTGCAAAAACGGTTTTCATGTTTT
GACAGGGGAGACGGGAGCGGGGAAGTCGATTATTATCGATGCGCTGAGCCTGATTGCAGGCGGCAGAACCTCTTCCGATC
TGGTGCGCTACGGGAGCGACAAAGCTACTATTGAGGCGATGTTCGGAATAGAGCCCGGCCATCCGGTGTGGGCCGTTCTG
GAGCGGTTGGGAATAGAAGCGGACCCGGAAGAGCATCTTATCATACGCAGAGAAATTACGGCGCAAGGCAAAAGCACTAG
CCGCATTAACGGACAGCTCGTCAATCTGGCCATGCTGAAGGAAGTCGGCGAATGGCTCGTGAACATTCACGGGCAGCATG
AGCATCAGTCCTTGTTTAAGGTGGAGGAGCATCTCCGCTGGCTCGATCTGTTCGGAGAAGCGGAGATTGCCCCTGCCAGA
CAGGCCTATCAAGAAGCTTATGATGCTTATCAAACCATACGCAAGCAAGTGAGAGAGCTGCAGGATACGAGCAAGCAAAA
TTTGCAGATGATGGACTTGTACCGTTTTCAGGTTGAGGAAATCCGAGCCGCCCAATTAAAACCGGGTGAGGATGAGGCAT
TGGCAGAGGAAAAACAAAAGCTGGGAAACGCGGAGAAACTGTATTCGAACGCGGCCGACGCTTATGATCTTCTCTATGGC
GGAGGCAAAGGGCTTGACTCGGTGCGCCGCGCCATGCAGAAGCTTCAGGATATTGCCGGGCTGGACCCGGCTAAGCTTCA
ATCTATTGCCGAACAGGTACAGAGTTCCTATTATCAGCTTGAGGATGCGGCCTATCAAATCAGGGATTACCGGGACGAGG
TGGAATTCAACCCGTCTCGTCTTGATTTTATCGAACAAAGACTGGATACAATATCGTCTCTTAGGAGAAAATATGGAGAT
ACCGTATCCGACATTTTGGCTTATGGGGACAAAATTGCGCATGAGCTGGATCTCATCGAGAATAAAGATGAGAAGCTAAT
GCAGCTGGAAAAGCAGGAACAAGCGGCATTTGCGGCCCTTCAGCGGTTGGCGGACGATTTGACCGGCCTAAGAAAAAGCG
TAGCTGATCGCCTTTCGGCGGAGATTGTAGCGGAGCTGCGTGAGCTTCATATGGAGAGGACGCAGTTTCAAGTGCATTTC
GCACCGGTGGAAGGGAGAAAGCTGACAAGAGACGGTGCCGATCAAGTCGAATTTCTGATTTCGGCGAATCCCGGAGAGCC
GCTTCGCTCTTTAAGCAAAATCGCTTCCGGCGGTGAAATATCGAGGGTTATGCTGGCGTTGAAATCGATATTTGCCCGGG
TGGACCGGATACCGGTTCTCGTCTTTGATGAGGTGGATACCGGGGTAAGCGGACGAGCGGCTCAGGCGATTGCTGAGAAA
ATGTCCAAGCTGTCGCAGAGCTGTCAAGTGTTCTCGATCACCCATTTGCCGCAGGTGGCCTGTATGGCGGACGCGCATTA
CCGTATACACAAAACAACGGATGGCGACCGGACATATACGAATGTAGACGACCTGGGTACTGACGAGAGGATTCATGAAC
TGGCGCGGATGCTGGGCGGAGTAGAGGTCACGGAGAAGACGCTCCAGCACGCACAGGAAATGCTTGCCTTGGCAAATGAT
AAAAAGGCAAGGATGGTCTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(14-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.396

100

0.482

Multiple sequence alignment