Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   IJ22_RS04925 Genome accession   NZ_CP013652
Coordinates   1030309..1031262 (+) Length   317 a.a.
NCBI ID   WP_062407687.1    Uniprot ID   A0A0U2MV02
Organism   Paenibacillus naphthalenovorans strain 32O-Y     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1025309..1036262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IJ22_RS04905 (IJ22_10050) lspA 1025664..1026185 (+) 522 WP_062407679.1 signal peptidase II -
  IJ22_RS04910 (IJ22_10060) - 1026189..1027139 (+) 951 WP_062407681.1 RluA family pseudouridine synthase -
  IJ22_RS04915 (IJ22_10070) - 1027156..1028325 (+) 1170 WP_062407683.1 aminotransferase A -
  IJ22_RS04920 (IJ22_10080) - 1028469..1030034 (+) 1566 WP_062407685.1 AraC family transcriptional regulator -
  IJ22_RS04925 (IJ22_10090) ceuB 1030309..1031262 (+) 954 WP_062407687.1 ABC transporter permease Machinery gene
  IJ22_RS04930 (IJ22_10100) - 1031252..1032202 (+) 951 WP_062407689.1 iron chelate uptake ABC transporter family permease subunit -
  IJ22_RS04935 (IJ22_10110) - 1032196..1032954 (+) 759 WP_062407692.1 ABC transporter ATP-binding protein -
  IJ22_RS04940 (IJ22_10120) - 1033063..1034046 (+) 984 WP_054818082.1 siderophore ABC transporter substrate-binding protein -
  IJ22_RS04945 (IJ22_10130) - 1034093..1035241 (-) 1149 WP_054818083.1 N-acetyldiaminopimelate deacetylase -
  IJ22_RS04950 (IJ22_10140) dapD 1035338..1036051 (-) 714 WP_062407693.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34919.28 Da        Isoelectric Point: 9.9212

>NTDB_id=163442 IJ22_RS04925 WP_062407687.1 1030309..1031262(+) (ceuB) [Paenibacillus naphthalenovorans strain 32O-Y]
MKKRYLLLALVVLSVTSVFIGVKNISILDIFHLSEDQAHILMDSRLPRLISIIIAGASMSIIGLIMQQLTQNKFVSPTTA
GTMDAARLGILVSMLIFSSATPLQKMLVAFVFALLGTLMFMKILDKVKMKDTIFIPLVGLMFGNILGSITTFFAYKHDLI
QSISTWLHGDFSMMMTGRYELLYISVPLVVIAYLFANRFTIAGMGEEFSVNLGLNYKQVVYIGLIIVAAVSSVVLLTVGM
LPFLGLIIPNIVTIYQGDHLKKNLSHTALLGAVFVLFCDILGRVIIYPYEISIGLTVGVIGSGIFLYLLMRRKAHGL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=163442 IJ22_RS04925 WP_062407687.1 1030309..1031262(+) (ceuB) [Paenibacillus naphthalenovorans strain 32O-Y]
ATGAAAAAAAGATACTTACTGCTCGCTCTCGTCGTCTTATCCGTCACATCCGTATTTATCGGGGTTAAGAACATCTCGAT
CCTGGATATATTCCATTTATCCGAGGACCAAGCCCACATCCTGATGGACAGCAGGCTGCCCCGGTTAATAAGTATTATTA
TCGCAGGTGCCAGCATGAGCATCATTGGTCTGATTATGCAGCAGCTGACTCAAAACAAATTCGTATCCCCGACGACAGCC
GGAACGATGGACGCGGCCCGATTAGGCATACTGGTGTCCATGCTGATTTTTTCTTCAGCCACTCCTTTGCAAAAGATGCT
TGTCGCTTTTGTTTTTGCGCTGCTCGGAACGCTGATGTTCATGAAAATTTTAGACAAAGTGAAGATGAAGGATACGATAT
TCATCCCTCTTGTTGGCCTTATGTTTGGAAATATTTTGGGCTCGATCACTACGTTTTTTGCCTATAAGCATGATCTCATT
CAAAGTATTTCCACATGGCTTCACGGGGATTTTTCCATGATGATGACGGGGCGCTATGAGCTGTTGTATATCAGTGTTCC
GTTGGTGGTCATCGCTTATTTGTTCGCCAACCGGTTTACGATTGCGGGGATGGGTGAGGAATTTTCCGTCAATTTGGGAC
TGAATTATAAACAGGTGGTATACATAGGCTTGATCATTGTAGCGGCCGTATCCTCTGTCGTGCTGCTTACGGTCGGCATG
TTACCGTTCCTGGGTCTCATTATCCCTAACATCGTGACGATTTATCAGGGAGATCATCTGAAAAAAAACCTTTCTCATAC
CGCTTTATTGGGAGCTGTGTTTGTATTATTTTGCGACATCCTCGGCCGGGTCATTATTTATCCGTATGAAATTTCCATAG
GCCTTACGGTCGGCGTGATCGGAAGCGGTATTTTTCTTTATTTACTCATGAGGAGAAAGGCACATGGCTTATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U2MV02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.077

98.738

0.514

Multiple sequence alignment