Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ATM98_RS08905 Genome accession   NZ_CP013651
Coordinates   1833042..1833773 (+) Length   243 a.a.
NCBI ID   WP_061564769.1    Uniprot ID   -
Organism   Streptococcus sp. A12     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1828042..1838773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATM98_RS08875 (ATM98_08880) - 1828507..1829928 (+) 1422 WP_061564768.1 NCS2 family permease -
  ATM98_RS08880 (ATM98_08885) tsaE 1830052..1830501 (+) 450 WP_048789375.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  ATM98_RS08885 (ATM98_08890) - 1830504..1831034 (+) 531 WP_048789374.1 GNAT family protein -
  ATM98_RS08890 (ATM98_08895) - 1831034..1832203 (+) 1170 WP_048688809.1 LCP family protein -
  ATM98_RS08895 (ATM98_08900) - 1832251..1832547 (-) 297 WP_048688812.1 hypothetical protein -
  ATM98_RS08900 (ATM98_08905) - 1832561..1832974 (-) 414 WP_048688815.1 HIT family protein -
  ATM98_RS08905 (ATM98_08910) pptA 1833042..1833773 (+) 732 WP_061564769.1 ABC transporter ATP-binding protein Regulator
  ATM98_RS08910 (ATM98_08915) - 1833770..1834825 (+) 1056 WP_061564770.1 ABC transporter permease -
  ATM98_RS08915 (ATM98_08920) - 1834866..1835660 (+) 795 WP_023022280.1 phosphotransferase family protein -
  ATM98_RS08920 (ATM98_08925) trmB 1835657..1836292 (+) 636 WP_061564771.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ATM98_RS08925 (ATM98_08930) rimP 1836457..1836945 (+) 489 WP_185759948.1 ribosome maturation factor RimP -
  ATM98_RS08930 (ATM98_08935) nusA 1836991..1838136 (+) 1146 WP_006596880.1 transcription termination factor NusA -
  ATM98_RS08935 (ATM98_08940) - 1838147..1838443 (+) 297 WP_006596879.1 YlxR family protein -
  ATM98_RS08940 (ATM98_08945) - 1838436..1838735 (+) 300 WP_048688831.1 YlxQ-related RNA-binding protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27001.37 Da        Isoelectric Point: 4.6428

>NTDB_id=163440 ATM98_RS08905 WP_061564769.1 1833042..1833773(+) (pptA) [Streptococcus sp. A12]
MLEIKNLTGGYVNIPVLKEVSFEVGDGQLIGLIGLNGAGKSTTINEIIGLLRPYAGEIRIDGLTLATSPSAYRQKIGYIP
ETPSLYEELTLREHIETVAMAYDLDQEAVFARVTPLLKQFRLEEKLDWFPVHFSKGMKQKVMIICAFAVDPSLFIVDEPF
LGLDPVAISDLIQLLKVEKEKGKSILMSTHVLDSAEKMCDAFVILHKGQVRAQGTLEDLRTEFGMADADLNEIYLALTKE
ADR

Nucleotide


Download         Length: 732 bp        

>NTDB_id=163440 ATM98_RS08905 WP_061564769.1 1833042..1833773(+) (pptA) [Streptococcus sp. A12]
ATGTTAGAAATAAAAAACCTGACAGGAGGCTATGTCAATATCCCTGTCTTAAAAGAAGTTAGTTTTGAGGTCGGTGATGG
TCAATTGATTGGATTGATCGGCTTGAATGGAGCAGGGAAATCAACGACCATTAATGAAATTATAGGTCTATTGCGTCCCT
ATGCTGGCGAAATCCGGATCGACGGTTTGACTTTAGCTACTTCTCCAAGTGCTTATCGCCAAAAAATTGGTTATATTCCT
GAAACACCGAGCCTTTATGAGGAGTTAACCCTGCGTGAGCATATTGAGACAGTGGCGATGGCCTATGACTTGGATCAGGA
AGCAGTTTTTGCGCGTGTGACTCCTCTCTTGAAGCAATTTCGACTAGAGGAAAAATTGGATTGGTTTCCTGTCCATTTTT
CTAAGGGGATGAAACAAAAGGTCATGATTATTTGTGCCTTTGCTGTTGATCCAAGTTTGTTTATTGTCGACGAGCCTTTC
TTAGGCTTGGATCCAGTTGCGATCTCAGATTTAATTCAATTATTGAAGGTGGAAAAAGAGAAGGGGAAATCTATTTTAAT
GAGTACCCATGTTCTGGATTCTGCTGAAAAAATGTGTGATGCCTTTGTCATCCTCCATAAGGGACAGGTCCGTGCTCAGG
GGACTTTAGAGGATTTGCGGACAGAATTTGGAATGGCAGATGCCGATTTGAATGAGATTTACCTTGCACTAACAAAAGAG
GCTGACCGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

98.354

0.741
  pptA Streptococcus thermophilus LMD-9

74.477

98.354

0.733

Multiple sequence alignment