Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ATM98_RS06205 Genome accession   NZ_CP013651
Coordinates   1286809..1288173 (-) Length   454 a.a.
NCBI ID   WP_125389279.1    Uniprot ID   -
Organism   Streptococcus sp. A12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1281809..1293173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATM98_RS06190 (ATM98_06195) - 1283080..1285086 (-) 2007 WP_061564449.1 DUF2079 domain-containing protein -
  ATM98_RS06195 (ATM98_06200) - 1285250..1285744 (-) 495 WP_061564450.1 carbonic anhydrase -
  ATM98_RS06200 (ATM98_06205) - 1286032..1286727 (-) 696 WP_006595479.1 TIGR00266 family protein -
  ATM98_RS06205 (ATM98_06210) radA 1286809..1288173 (-) 1365 WP_125389279.1 DNA repair protein RadA Machinery gene
  ATM98_RS06210 (ATM98_06215) - 1288184..1288699 (-) 516 WP_048789245.1 histidine phosphatase family protein -
  ATM98_RS06215 (ATM98_06220) - 1288718..1289020 (-) 303 Protein_1237 isochorismatase family protein -
  ATM98_RS09545 - 1289016..1289177 (-) 162 Protein_1238 DNA repair protein RadA -
  ATM98_RS06220 (ATM98_06225) - 1289188..1289727 (-) 540 WP_045759967.1 histidine phosphatase family protein -
  ATM98_RS06225 (ATM98_06230) - 1289729..1290175 (-) 447 WP_048691434.1 dUTP diphosphatase -
  ATM98_RS06230 (ATM98_06235) - 1290413..1291102 (-) 690 WP_048691431.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  ATM98_RS06235 (ATM98_06240) - 1291305..1292321 (+) 1017 WP_048691428.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49464.98 Da        Isoelectric Point: 6.3722

>NTDB_id=163409 ATM98_RS06205 WP_125389279.1 1286809..1288173(-) (radA) [Streptococcus sp. A12]
MIAKKKTTFICQNCAYNSPKYLGRCPNCGSWSSFVEEVEVTEIKNARVSLTGEKTKPMKLADVTSINVHRTKTEMEEFNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEV
ERIQPNFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGE
RHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNA
KRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEI
RRVTRIEQRINEAAKLGFTKIYAPKNSLQGIAIPDGIQVIAVSTVGEVLKRVFS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=163409 ATM98_RS06205 WP_125389279.1 1286809..1288173(-) (radA) [Streptococcus sp. A12]
ATCATAGCTAAGAAAAAAACGACTTTTATTTGTCAAAATTGTGCCTACAATTCACCCAAGTATCTAGGGCGCTGTCCTAA
CTGTGGGTCTTGGTCTTCTTTTGTCGAGGAAGTTGAGGTCACCGAGATTAAGAATGCGCGTGTGTCCTTAACGGGTGAAA
AGACCAAACCCATGAAACTGGCGGATGTGACCTCCATCAATGTCCATCGGACCAAGACGGAGATGGAGGAATTCAACCGC
GTCCTTGGAGGCGGTGTCGTCCCAGGAAGTCTGGTCCTCATCGGGGGAGATCCAGGGATTGGGAAATCGACCCTGCTCCT
TCAAGTATCGACCCAGCTGTCTCAAGTGGGAACGGTTCTCTACGTCAGTGGCGAGGAATCGGCCCAGCAGATCAAACTTC
GGGCAGAGCGCTTGGGGGATATCGACAGTGAGTTTTACCTCTATGCTGAGACCAATATGCAGAGCGTGCGAGCAGAAGTG
GAACGCATCCAGCCTAACTTCCTTATCATCGACTCTATCCAGACCATTATGTCTCCTGAAATTTCAGGGGTGCAGGGATC
GGTTTCTCAGGTGCGGGAAGTAACAGCTGAGCTCATGCAACTGGCCAAAACCAATAACATCGCTATCTTCATCGTCGGCC
ATGTGACCAAGGAAGGGACTTTGGCAGGGCCTCGGATGTTGGAGCACATGGTGGATACGGTGCTCTATTTTGAGGGCGAG
CGCCACCACACCTTCCGGATCCTGAGAGCGGTCAAGAACCGCTTTGGCTCCACCAATGAGATTGGGATTTTCGAGATGCA
GTCAGGCGGGCTGGTTGAGGTCCTCAACCCGAGTCAGGTCTTTCTAGAAGAACGCTTGGATGGGGCAACTGGCTCTGCCA
TTGTCGTCACCATGGAAGGAAGCAGACCAATCTTGGCGGAAGTTCAGGCCTTGGTGACACCGACTGTATTTGGAAATGCC
AAGCGGACAACAACGGGTCTTGATTTTAACCGGGTTAGCCTCATTATGGCTGTTTTAGAGAAACGTTGTGGACTTCTTCT
CCAAAATCAGGATGCCTATCTCAAGTCAGCTGGTGGTGTCAAACTGGACGAACCAGCCATTGACTTAGCCGTAGCGGTGG
CCATTGCTTCTAGCTACAAGGAGCTTCCAACCAATCCTCAAGAGGCCTTTATCGGTGAGATTGGCTTGACTGGTGAGATT
CGTCGCGTGACTCGGATTGAGCAGCGGATTAACGAAGCGGCCAAACTTGGTTTCACTAAGATTTACGCGCCAAAAAATTC
TCTCCAAGGGATCGCGATACCAGATGGTATTCAAGTGATAGCGGTCTCCACTGTAGGAGAGGTTCTTAAAAGAGTCTTTT
CTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(361-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(66-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

92.936

99.78

0.927
  radA Streptococcus pneumoniae D39

92.936

99.78

0.927
  radA Streptococcus pneumoniae R6

92.936

99.78

0.927
  radA Streptococcus pneumoniae TIGR4

92.936

99.78

0.927
  radA Streptococcus mitis SK321

92.936

99.78

0.927
  radA Streptococcus mitis NCTC 12261

92.715

99.78

0.925
  radA Bacillus subtilis subsp. subtilis str. 168

62.252

99.78

0.621

Multiple sequence alignment