Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ATM98_RS01055 Genome accession   NZ_CP013651
Coordinates   189190..190992 (+) Length   600 a.a.
NCBI ID   WP_048689245.1    Uniprot ID   -
Organism   Streptococcus sp. A12     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 184190..195992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATM98_RS01030 (ATM98_01030) - 184250..185413 (+) 1164 WP_061563765.1 MFS transporter -
  ATM98_RS01035 (ATM98_01035) - 185496..186785 (+) 1290 WP_061563766.1 DUF1958 domain-containing protein -
  ATM98_RS01040 (ATM98_01040) - 187080..187634 (+) 555 WP_061563767.1 hypothetical protein -
  ATM98_RS01045 (ATM98_01045) coiA 187794..188744 (+) 951 WP_061563768.1 competence protein CoiA family protein Machinery gene
  ATM98_RS01050 (ATM98_01050) - 188912..189121 (+) 210 WP_061563769.1 hypothetical protein -
  ATM98_RS01055 (ATM98_01055) pepF 189190..190992 (+) 1803 WP_048689245.1 oligoendopeptidase F Regulator
  ATM98_RS01060 (ATM98_01060) - 190994..191707 (+) 714 WP_048689248.1 O-methyltransferase -
  ATM98_RS01065 (ATM98_01065) prsA 191785..192726 (+) 942 WP_048689251.1 peptidylprolyl isomerase PrsA -
  ATM98_RS01070 (ATM98_01070) - 193018..193503 (+) 486 WP_048689253.1 LURP-one-related family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69160.23 Da        Isoelectric Point: 4.6174

>NTDB_id=163392 ATM98_RS01055 WP_048689245.1 189190..190992(+) (pepF) [Streptococcus sp. A12]
MVKQRNEIDEKYQWDLSTIFATDQAWEEEATALAAAIKDAAHFAGSLLSSPANLLETTEVYLDLNRRLEKVYVYAHMKND
QDTRVAKYQEFQSKAMSLYSLLGETFAFYEPEFMEITEEQYANFLKEVPALEAYAHYFDKLLKTKEHVLSQKEEELLAGA
GEIFAAAGETFEILDNADIVFPMVKDDQGQEVQLTHGNYISLVESKDRQVRKEAYQALYGVYEQYQHTYAKTLQTNVKVH
NYNAKVRKFSSAREAALSANFIPESVYDSLVEAVNKHLPLLQRYVKLRSKILGIEDLKMYDVYTPLSSTDYKFTYEEALA
KSEQALAVLGGDYLSRVKRAFTERWIDVHVNQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEQLLSEVEDDETRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNELYADLNEKYYGLSKEDNPEIQYEWARIPHFYYNYYVFQYSTGFAAASALAEKIVHGTQEDKDKYLEYLKAGNSDYPL
NVIRKAGVDMEKEDYLHAAFEVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=163392 ATM98_RS01055 WP_048689245.1 189190..190992(+) (pepF) [Streptococcus sp. A12]
ATGGTAAAACAACGAAATGAAATTGATGAAAAATACCAATGGGATTTGTCGACCATTTTTGCGACAGACCAAGCATGGGA
AGAAGAAGCAACTGCTTTAGCTGCAGCCATTAAAGATGCTGCTCATTTTGCAGGTTCTTTATTGTCTTCTCCAGCTAACC
TATTAGAAACCACAGAAGTTTATTTGGACTTGAACCGTCGTTTGGAGAAGGTTTATGTCTACGCTCATATGAAGAATGAC
CAGGACACACGCGTAGCCAAATACCAAGAATTCCAATCAAAAGCGATGTCCCTTTACAGCCTTTTAGGGGAGACCTTTGC
CTTCTACGAACCAGAATTTATGGAGATCACTGAGGAGCAATACGCCAACTTCTTGAAAGAAGTCCCTGCTTTAGAAGCTT
ATGCTCATTACTTTGACAAATTGCTCAAAACCAAAGAGCATGTCCTTTCTCAAAAAGAAGAAGAATTGTTAGCAGGAGCA
GGTGAAATCTTTGCTGCGGCAGGTGAAACCTTTGAGATTTTGGACAATGCAGATATCGTCTTCCCGATGGTGAAGGATGA
CCAAGGCCAAGAAGTTCAGTTGACCCATGGAAACTATATTTCTTTGGTAGAGTCTAAGGACCGCCAAGTCCGTAAGGAAG
CTTACCAAGCCTTGTATGGTGTCTATGAACAGTACCAACATACCTATGCTAAGACCCTTCAGACTAACGTCAAGGTCCAC
AATTACAATGCTAAGGTTCGCAAATTTTCTAGCGCGCGTGAGGCAGCTCTTTCTGCTAACTTTATCCCAGAGAGCGTCTA
CGATAGTCTGGTAGAAGCGGTTAACAAGCATTTGCCTTTGTTGCAACGCTACGTGAAACTCCGCTCAAAAATCTTAGGAA
TTGAAGATTTGAAGATGTATGATGTCTACACGCCACTGTCTTCTACTGATTACAAGTTCACCTATGAAGAAGCACTTGCT
AAGTCTGAGCAGGCTTTGGCGGTGCTTGGTGGTGACTACCTATCTCGCGTGAAGCGCGCCTTTACTGAACGTTGGATCGA
CGTCCATGTCAACCAAGGAAAACGCTCAGGTGCCTATTCAGGTGGTTCTTATGATACCAATGCCTTTATGTTGTTGAACT
GGCAAGATACATTGGACAATCTCTTCACCTTGGTGCATGAGACTGGCCATAGTATGCACTCCAGCTACACCCGTGAAACC
CAACCTTATGTCTATGGGGACTATTCGATCTTCCTTGCGGAGATTGCATCTACAACCAATGAAAATATCTTGACTGAGCA
ACTGTTGTCAGAAGTAGAAGATGATGAGACCCGTTTTGCTATTCTCAACCACTTCTTGGATGGCTTCCGTGGTACAGTCT
TCCGTCAAACCCAGTTTGCTGAGTTTGAACATGCGATTCACAAGGCCGACCAAGAAGGACAAGTCTTGACCAGCGAATTC
TTGAATGAGCTGTATGCGGACTTGAATGAGAAATATTATGGTCTTTCAAAAGAAGACAATCCAGAAATCCAATACGAATG
GGCTCGCATTCCTCATTTCTACTATAACTACTATGTTTTCCAATATTCGACTGGTTTTGCAGCAGCCTCTGCCTTGGCTG
AGAAGATCGTTCATGGAACACAGGAAGATAAGGACAAATACCTAGAGTATTTGAAGGCCGGAAATTCGGACTACCCACTC
AATGTGATCCGCAAGGCAGGTGTTGATATGGAAAAAGAAGACTACCTTCATGCCGCCTTTGAAGTCTTTGAACGTCGTCT
CAATGAATTTGAGGCCCTCGTTGAAAAATTAGGATTGGCCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.463

99.333

0.69

Multiple sequence alignment