Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   AUC50_RS10860 Genome accession   NZ_CP013621
Coordinates   2158951..2159667 (+) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain RIVM3897     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2153951..2164667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUC50_RS10825 (AUC50_10805) - 2154217..2154843 (+) 627 WP_000522384.1 nitroreductase family protein -
  AUC50_RS10835 (AUC50_10815) - 2155151..2155937 (+) 787 Protein_2083 carbon-nitrogen family hydrolase -
  AUC50_RS15940 hld 2156539..2156619 (-) 81 WP_000046022.1 delta-hemolysin -
  AUC50_RS10845 (AUC50_10825) agrB 2156909..2157478 (+) 570 WP_001105708.1 accessory gene regulator AgrB -
  AUC50_RS10850 (AUC50_10830) agrD 2157475..2157615 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  AUC50_RS10855 (AUC50_10835) agrC 2157640..2158932 (+) 1293 WP_001825886.1 quorum-sensing sensor histidine kinase AgrC -
  AUC50_RS10860 (AUC50_10840) agrA 2158951..2159667 (+) 717 WP_000688492.1 quorum-sensing response regulator AgrA Regulator
  AUC50_RS10865 (AUC50_10845) - 2160041..2161000 (-) 960 WP_001253294.1 carbohydrate kinase family protein -
  AUC50_RS10870 (AUC50_10850) - 2160997..2162481 (-) 1485 WP_000141407.1 sucrose-6-phosphate hydrolase -
  AUC50_RS10875 (AUC50_10855) - 2162630..2163580 (-) 951 WP_000790325.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=163350 AUC50_RS10860 WP_000688492.1 2158951..2159667(+) (agrA) [Staphylococcus aureus strain RIVM3897]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=163350 AUC50_RS10860 WP_000688492.1 2158951..2159667(+) (agrA) [Staphylococcus aureus strain RIVM3897]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACGTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAAAGATAATAGCGTTGAAACGATTGAGTTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTCAGATGTCATAATAGCTTTGTCGTCAATCGTCATAATATCGAATCTATTG
ATTCGAAAGAGCGTATTGTTTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1

Multiple sequence alignment