Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AT236_RS08900 Genome accession   NZ_CP013610
Coordinates   1729520..1731322 (+) Length   600 a.a.
NCBI ID   WP_003624726.1    Uniprot ID   A0AAV5PF04
Organism   Lactobacillus delbrueckii subsp. bulgaricus strain MN-BM-F01     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1724520..1736322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT236_RS08885 (AT236_01967) - 1725923..1726300 (-) 378 WP_002879494.1 hypothetical protein -
  AT236_RS08890 (AT236_01968) - 1726419..1727558 (-) 1140 WP_003624372.1 LCP family protein -
  AT236_RS10535 - 1727753..1727944 (-) 192 WP_162097417.1 hypothetical protein -
  AT236_RS08895 (AT236_01969) - 1727899..1729197 (+) 1299 WP_060598208.1 RNA-guided endonuclease InsQ/TnpB family protein -
  AT236_RS08900 (AT236_01970) pepF 1729520..1731322 (+) 1803 WP_003624726.1 oligoendopeptidase F Regulator
  AT236_RS08905 (AT236_01971) - 1731392..1732024 (-) 633 Protein_1727 alpha-hydroxy-acid oxidizing protein -
  AT236_RS10495 (AT236_01972) - 1732151..1732324 (+) 174 WP_158423607.1 hypothetical protein -
  AT236_RS08910 (AT236_01974) - 1732393..1732836 (-) 444 WP_003624719.1 zinc ribbon domain-containing protein -
  AT236_RS08915 (AT236_01975) - 1732973..1733770 (-) 798 WP_003621140.1 metal ABC transporter permease -
  AT236_RS08920 (AT236_01976) - 1733770..1734423 (-) 654 WP_003621138.1 metal ABC transporter ATP-binding protein -
  AT236_RS08925 (AT236_01977) - 1734449..1735249 (-) 801 WP_003621136.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68242.06 Da        Isoelectric Point: 4.4766

>NTDB_id=163199 AT236_RS08900 WP_003624726.1 1729520..1731322(+) (pepF) [Lactobacillus delbrueckii subsp. bulgaricus strain MN-BM-F01]
MEIPYRSEVPKEQTWDLTRVFKTEADWEAAFKAVKQEVKALPALEDGFTESAAVLYDRLTQIFAVDRRLSKIYVYASMAS
DVDTSNQKKLALNSRGQSLAAEYQAAVAFIQPAVLALGKEALDAFFKEEPRLENYRHYLEQIVKQEEHVLPAEEEKLVSA
AGDALSASANTFNVLTNSDLQFPYIEDEDGEAVELTEANYDILIQSQNREVREDAFDALYAGYGQFASTFASTLAGNVKA
HNFDAQTHHYQDALAAALSENNIPVDVYNQLLTSVHKHLDLLHRYVNLREEILDLKGDLQMWDMYVPITGKPSLSYTFAE
AKAQAREALQVLGEDYVKHVDYLFNNRCIDHVANMHKQSGAYSGGAYDTDAYVLLNWQGDLDSLYTLVHETGHSVHSMYT
RENQPYVYGDYPIFVAEIASTTNENLLTNYFLDRVTDPKTRAFLLNYYLSSFKGTVYRQTQFAEFEKFIHESDQAGEALT
ADYLCGFYDRLNQQYYGPAISLGSDIDLEWARIPHFYYNFYVYQYATGFAAATALANKITYGSQEDKEKYLDFLKSGSSD
YPINIMQKAGVDMTKSDYLEDAFKVFAERLDEFTDLIKKL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=163199 AT236_RS08900 WP_003624726.1 1729520..1731322(+) (pepF) [Lactobacillus delbrueckii subsp. bulgaricus strain MN-BM-F01]
ATGGAAATCCCTTATCGCAGTGAGGTTCCCAAAGAACAGACCTGGGACTTGACCCGGGTCTTCAAGACTGAGGCGGACTG
GGAGGCCGCCTTTAAAGCTGTCAAGCAGGAAGTCAAGGCCCTGCCGGCCTTGGAAGACGGCTTTACGGAGAGCGCGGCCG
TCCTCTATGACCGCTTGACCCAGATTTTTGCCGTTGACCGCCGCCTGTCCAAGATCTACGTCTATGCCAGCATGGCCAGC
GACGTCGACACCAGCAACCAGAAGAAGCTGGCCCTCAATTCCCGCGGACAGAGCCTGGCCGCTGAATACCAGGCGGCTGT
TGCCTTCATTCAGCCGGCTGTTTTAGCCTTGGGGAAAGAGGCCCTGGACGCCTTTTTCAAGGAAGAGCCAAGACTGGAAA
ACTACCGGCACTATTTGGAACAGATCGTCAAGCAAGAAGAGCACGTTTTGCCAGCTGAAGAGGAGAAGCTGGTATCGGCG
GCCGGGGATGCCCTGTCAGCTTCGGCCAACACCTTCAACGTCTTGACCAACTCCGATTTGCAATTCCCTTACATTGAAGA
TGAAGACGGGGAAGCAGTGGAACTGACGGAAGCCAACTACGACATCTTGATCCAGTCCCAGAACCGGGAAGTCAGAGAGG
ACGCCTTTGACGCCCTTTACGCTGGCTACGGCCAGTTTGCGTCAACTTTTGCCTCAACCTTGGCCGGCAATGTCAAGGCC
CACAACTTTGATGCCCAGACCCACCACTACCAGGACGCCTTAGCCGCGGCTCTGTCAGAAAACAACATCCCTGTCGACGT
CTACAACCAGCTTTTGACTAGCGTCCACAAGCACCTGGACCTCCTCCACCGCTATGTCAACTTGCGCGAAGAGATCCTGG
ACCTGAAGGGCGACCTGCAAATGTGGGACATGTACGTGCCGATCACGGGCAAGCCAAGCCTCAGCTACACTTTCGCTGAA
GCCAAGGCCCAGGCCAGAGAGGCCCTGCAGGTTTTGGGCGAGGACTATGTCAAACACGTCGACTACCTCTTCAATAACCG
CTGCATCGACCACGTGGCTAACATGCACAAGCAAAGCGGGGCCTACTCCGGCGGGGCTTATGACACCGACGCCTATGTGC
TCTTGAACTGGCAGGGGGACCTGGATTCCCTCTACACTCTGGTCCACGAGACCGGCCACTCAGTCCACAGCATGTACACC
CGGGAAAACCAGCCATACGTGTACGGGGACTATCCGATCTTTGTCGCGGAAATTGCCTCAACGACCAATGAAAACCTGCT
GACCAACTACTTCCTGGACCGGGTGACGGATCCAAAGACCCGGGCCTTCCTGCTCAACTACTACTTGAGCTCCTTTAAGG
GAACGGTCTACCGGCAGACCCAGTTCGCGGAATTCGAGAAGTTCATTCATGAAAGCGACCAGGCGGGTGAAGCCTTGACG
GCTGACTACCTGTGCGGCTTCTACGACCGGCTCAACCAGCAGTACTACGGCCCAGCGATCAGCCTGGGCAGCGACATCGA
CCTGGAATGGGCCCGGATCCCCCACTTCTATTACAACTTCTACGTCTACCAGTACGCGACCGGCTTTGCCGCGGCGACTG
CCCTGGCTAACAAGATTACTTACGGCAGCCAGGAAGACAAGGAGAAGTACCTGGACTTCCTTAAGTCCGGCTCCAGCGAC
TACCCGATCAACATCATGCAGAAGGCCGGCGTCGACATGACCAAGTCCGACTACCTGGAAGATGCCTTCAAGGTCTTTGC
GGAAAGACTGGACGAATTTACTGACTTAATCAAAAAATTGTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(115-182)

Peptidase family M3 (Peptidase_M3)

(203-584)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.832

99

0.493

Multiple sequence alignment