Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AMC88_RS10710 Genome accession   NZ_CP013532
Coordinates   2195976..2196491 (+) Length   171 a.a.
NCBI ID   WP_004671899.1    Uniprot ID   A0A1C3XWR3
Organism   Rhizobium phaseoli strain R650     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2190976..2201491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMC88_RS10695 (AMC88_CH02178) - 2191484..2192290 (-) 807 WP_012483789.1 DUF72 domain-containing protein -
  AMC88_RS10700 (AMC88_CH02179) - 2192314..2192775 (-) 462 WP_064825255.1 GNAT family N-acetyltransferase -
  AMC88_RS10705 (AMC88_CH02180) uvrA 2192772..2195693 (-) 2922 WP_012483791.1 excinuclease ABC subunit UvrA -
  AMC88_RS10710 (AMC88_CH02181) ssb 2195976..2196491 (+) 516 WP_004671899.1 single-stranded DNA-binding protein Machinery gene
  AMC88_RS10715 (AMC88_CH02182) - 2196593..2197240 (-) 648 WP_004671901.1 MarC family protein -
  AMC88_RS10720 (AMC88_CH02183) gyrA 2197478..2200300 (+) 2823 WP_029531195.1 DNA gyrase subunit A -
  AMC88_RS34490 (AMC88_CH02184) - 2200531..2200665 (-) 135 WP_004671905.1 hypothetical protein -
  AMC88_RS33595 (AMC88_CH02185) - 2200702..2200857 (-) 156 WP_003539654.1 hypothetical protein -
  AMC88_RS10725 (AMC88_CH02186) - 2201000..2201278 (-) 279 WP_064825256.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18406.10 Da        Isoelectric Point: 5.3093

>NTDB_id=163091 AMC88_RS10710 WP_004671899.1 2195976..2196491(+) (ssb) [Rhizobium phaseoli strain R650]
MAGSVNKVILVGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFSSTLTMLDGRGDGGGASSGFGGGRGGSSNNDYGDDYGAPAPSSSPSRGGGGGN
FSRDLDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=163091 AMC88_RS10710 WP_004671899.1 2195976..2196491(+) (ssb) [Rhizobium phaseoli strain R650]
ATGGCTGGTAGCGTGAACAAGGTAATTCTGGTTGGAAATGTGGGTGCAGATCCCGAAATCCGCCGCACTCAGGATGGCCG
GCCGATCGCCAATCTTCGTATCGCGACCTCGGAGACCTGGCGTGACCGCAATTCCGGCGAACGCCGCGAAAAGACGGAAT
GGCACACTGTCGTCGTCTTCAACGAAGGCCTCTGCAAGGTCGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGCCAATTGCAGACCCGCAAGTGGCAGGACCAGCAGGGCCAGGACCGCTACTCGACGGAAGTGGTGCTGCAGGGCTT
CAGCTCGACGCTGACGATGCTCGACGGCCGCGGCGATGGCGGCGGCGCAAGCTCCGGCTTCGGCGGCGGCCGTGGCGGCA
GCAGCAACAATGACTACGGCGACGATTATGGCGCCCCGGCTCCCTCTTCATCGCCGAGCCGCGGCGGTGGCGGCGGCAAC
TTCTCGCGCGATCTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3XWR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.571

100

0.497
  ssb Glaesserella parasuis strain SC1401

44.681

100

0.491
  ssb Neisseria gonorrhoeae MS11

37.778

100

0.398
  ssb Neisseria meningitidis MC58

37.778

100

0.398

Multiple sequence alignment