Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AMC89_RS10975 | Genome accession | NZ_CP013527 |
| Coordinates | 2252002..2252517 (+) | Length | 171 a.a. |
| NCBI ID | WP_004671899.1 | Uniprot ID | A0A1C3XWR3 |
| Organism | Rhizobium phaseoli strain R723 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2247002..2257517
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AMC89_RS10960 (AMC89_CH02237) | - | 2247511..2248317 (-) | 807 | WP_064819417.1 | DUF72 domain-containing protein | - |
| AMC89_RS10965 (AMC89_CH02238) | - | 2248341..2248801 (-) | 461 | Protein_2189 | GNAT family N-acetyltransferase | - |
| AMC89_RS10970 (AMC89_CH02239) | uvrA | 2248798..2251719 (-) | 2922 | WP_064818223.1 | excinuclease ABC subunit UvrA | - |
| AMC89_RS10975 (AMC89_CH02240) | ssb | 2252002..2252517 (+) | 516 | WP_004671899.1 | single-stranded DNA-binding protein | Machinery gene |
| AMC89_RS10980 (AMC89_CH02241) | - | 2252620..2253267 (-) | 648 | WP_004671901.1 | MarC family protein | - |
| AMC89_RS10985 (AMC89_CH02242) | gyrA | 2253505..2256327 (+) | 2823 | WP_064818224.1 | DNA gyrase subunit A | - |
| AMC89_RS34820 (AMC89_CH02243) | - | 2256583..2256717 (-) | 135 | WP_004671905.1 | hypothetical protein | - |
| AMC89_RS33990 (AMC89_CH02244) | - | 2256754..2256909 (-) | 156 | WP_003539654.1 | hypothetical protein | - |
| AMC89_RS10990 (AMC89_CH02245) | - | 2257052..2257330 (-) | 279 | WP_064818225.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18406.10 Da Isoelectric Point: 5.3093
>NTDB_id=163084 AMC89_RS10975 WP_004671899.1 2252002..2252517(+) (ssb) [Rhizobium phaseoli strain R723]
MAGSVNKVILVGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFSSTLTMLDGRGDGGGASSGFGGGRGGSSNNDYGDDYGAPAPSSSPSRGGGGGN
FSRDLDDDIPF
MAGSVNKVILVGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFSSTLTMLDGRGDGGGASSGFGGGRGGSSNNDYGDDYGAPAPSSSPSRGGGGGN
FSRDLDDDIPF
Nucleotide
Download Length: 516 bp
>NTDB_id=163084 AMC89_RS10975 WP_004671899.1 2252002..2252517(+) (ssb) [Rhizobium phaseoli strain R723]
ATGGCTGGTAGCGTGAACAAGGTAATTCTGGTTGGAAACGTGGGTGCAGACCCCGAAATCCGCCGCACTCAGGATGGCCG
GCCGATCGCCAATCTTCGCATCGCGACCTCGGAGACCTGGCGCGACCGCAATTCCGGCGAACGCCGCGAAAAGACCGAAT
GGCACACTGTCGTCGTCTTCAACGAAGGCCTCTGCAAGGTCGTCGAACAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGCCAGTTGCAGACCCGCAAGTGGCAGGACCAGCAGGGCCAGGACCGCTACTCGACGGAAGTGGTGCTGCAGGGCTT
CAGCTCGACGCTGACGATGCTCGACGGCCGCGGCGACGGCGGCGGCGCAAGCTCCGGCTTCGGCGGCGGTCGCGGCGGCA
GCAGCAACAATGACTACGGCGACGATTACGGCGCCCCGGCTCCCTCTTCATCGCCGAGCCGCGGCGGTGGCGGCGGCAAC
TTCTCGCGCGATCTCGACGACGATATCCCGTTCTGA
ATGGCTGGTAGCGTGAACAAGGTAATTCTGGTTGGAAACGTGGGTGCAGACCCCGAAATCCGCCGCACTCAGGATGGCCG
GCCGATCGCCAATCTTCGCATCGCGACCTCGGAGACCTGGCGCGACCGCAATTCCGGCGAACGCCGCGAAAAGACCGAAT
GGCACACTGTCGTCGTCTTCAACGAAGGCCTCTGCAAGGTCGTCGAACAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGCCAGTTGCAGACCCGCAAGTGGCAGGACCAGCAGGGCCAGGACCGCTACTCGACGGAAGTGGTGCTGCAGGGCTT
CAGCTCGACGCTGACGATGCTCGACGGCCGCGGCGACGGCGGCGGCGCAAGCTCCGGCTTCGGCGGCGGTCGCGGCGGCA
GCAGCAACAATGACTACGGCGACGATTACGGCGCCCCGGCTCCCTCTTCATCGCCGAGCCGCGGCGGTGGCGGCGGCAAC
TTCTCGCGCGATCTCGACGACGATATCCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
48.571 |
100 |
0.497 |
| ssb | Glaesserella parasuis strain SC1401 |
44.681 |
100 |
0.491 |
| ssb | Neisseria gonorrhoeae MS11 |
37.778 |
100 |
0.398 |
| ssb | Neisseria meningitidis MC58 |
37.778 |
100 |
0.398 |