Detailed information NTG0163002

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AT730_RS08400
• Genome accession: NZ_CP013484
• Coordinates: 1828061..1829047 (-)
• Length: 328 a.a.
• NCBI ID: WP_064368766.1
• Uniprot ID: A0AAW9AQQ0
• Organism: Vibrio alginolyticus strain ATCC 33787
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1823061..1834047

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AT730_RS08385 (AT730_08370)	recA	1823606..1824649 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
AT730_RS08390 (AT730_08375)	pncC	1824850..1825332 (-)	483	WP_017633544.1	nicotinamide-nucleotide amidase	-
AT730_RS08395 (AT730_08380)	mutS	1825417..1827978 (+)	2562	WP_005380877.1	DNA mismatch repair protein MutS	-
AT730_RS08400 (AT730_08385)	rpoS	1828061..1829047 (-)	987	WP_064368766.1	RNA polymerase sigma factor RpoS	Regulator
AT730_RS08405 (AT730_08390)	-	1829128..1830051 (-)	924	WP_017633546.1	peptidoglycan DD-metalloendopeptidase family protein	-
AT730_RS08410 (AT730_08395)	-	1830065..1830691 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AT730_RS08415 (AT730_08400)	surE	1830691..1831467 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
AT730_RS08420 (AT730_08405)	truD	1831467..1832510 (-)	1044	WP_064368767.1	tRNA pseudouridine(13) synthase TruD	-
AT730_RS08425 (AT730_08410)	ispF	1832556..1833032 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AT730_RS08430 (AT730_08415)	ispD	1833047..1833754 (-)	708	WP_017821625.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AT730_RS08435 (AT730_08420)	ftsB	1833756..1834037 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37422.35 Da
• Isoelectric Point: 4.7299

>NTDB_id=163002 AT730_RS08400 WP_064368766.1 1828061..1829047(-) (rpoS) [Vibrio alginolyticus strain ATCC 33787]
MSISNTVTKVEEFAFDNASVKTIDNELERSSPTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=163002 AT730_RS08400 WP_064368766.1 1828061..1829047(-) (rpoS) [Vibrio alginolyticus strain ATCC 33787]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCACCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACGTGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAATAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854