Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AT730_RS08270 Genome accession   NZ_CP013484
Coordinates   1805895..1806413 (-) Length   172 a.a.
NCBI ID   WP_017820391.1    Uniprot ID   A0A2I3C9Z1
Organism   Vibrio alginolyticus strain ATCC 33787     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1800895..1811413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT730_RS08245 (AT730_08230) rimM 1800984..1801532 (-) 549 WP_005379964.1 ribosome maturation factor RimM -
  AT730_RS08250 (AT730_08235) rpsP 1801562..1801810 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  AT730_RS08255 (AT730_08240) ffh 1802020..1803402 (-) 1383 WP_005385423.1 signal recognition particle protein -
  AT730_RS08260 (AT730_08245) - 1803627..1804421 (+) 795 WP_005379950.1 cytochrome C assembly family protein -
  AT730_RS08265 (AT730_08250) - 1804546..1805826 (+) 1281 WP_005379948.1 HlyC/CorC family transporter -
  AT730_RS08270 (AT730_08255) luxS 1805895..1806413 (-) 519 WP_017820391.1 S-ribosylhomocysteine lyase Regulator
  AT730_RS08275 (AT730_08260) - 1806498..1807103 (-) 606 WP_171343190.1 hypothetical protein -
  AT730_RS08280 (AT730_08265) gshA 1807127..1808695 (-) 1569 WP_064368762.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19074.83 Da        Isoelectric Point: 4.8443

>NTDB_id=162999 AT730_RS08270 WP_017820391.1 1805895..1806413(-) (luxS) [Vibrio alginolyticus strain ATCC 33787]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLKEAQQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=162999 AT730_RS08270 WP_017820391.1 1805895..1806413(-) (luxS) [Vibrio alginolyticus strain ATCC 33787]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGTATGAATGCACCCGCTGTACGAGTGGCGAAAACCATGCAGAC
CCCAAAAGGGGATACGATTACTGTTTTCGACTTACGCTTTACTGCGCCAAACAAAGACATTCTTTCTGAAAAAGGTATTC
ACACCCTAGAGCACCTTTATGCAGGCTTTATGCGTAATCACCTAAACGGTGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACAGGTTTTTACATGAGCCTGATTGGCACACCATCAGAGCAGCAAGTCGCAGATGCTTGGATTGCAGC
AATGGAAGATGTGCTGAAGGTAGAAAGTCAGAATAAGATCCCTGAACTTAACGAATACCAATGCGGCACGGCAGCAATGC
ACTCTTTAAAAGAAGCACAACAGATCGCAAAGAACATTTTGGATGCTGGTGTTTCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAGTCGATGTTAAAAGAGTTGCGCATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3C9Z1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment