Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AT730_RS06045 Genome accession   NZ_CP013484
Coordinates   1328286..1329692 (-) Length   468 a.a.
NCBI ID   WP_064368650.1    Uniprot ID   A0AAW9ANZ6
Organism   Vibrio alginolyticus strain ATCC 33787     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1323286..1334692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT730_RS06010 (AT730_05995) moaE 1323792..1324247 (-) 456 WP_017821374.1 molybdopterin synthase catalytic subunit MoaE -
  AT730_RS06015 (AT730_06000) moaD 1324249..1324506 (-) 258 WP_005388938.1 molybdopterin synthase sulfur carrier subunit -
  AT730_RS06020 (AT730_06005) moaC 1324503..1324982 (-) 480 WP_005380779.1 cyclic pyranopterin monophosphate synthase MoaC -
  AT730_RS06025 (AT730_06010) moaB 1325009..1325521 (-) 513 WP_005388935.1 molybdenum cofactor biosynthesis protein B -
  AT730_RS06030 (AT730_06015) moaA 1325623..1326612 (-) 990 WP_005380776.1 GTP 3',8-cyclase MoaA -
  AT730_RS06035 (AT730_06020) - 1326911..1327807 (+) 897 WP_017821373.1 YvcK family protein -
  AT730_RS06040 (AT730_06025) luxU 1327945..1328289 (-) 345 WP_005380770.1 quorum-sensing phosphorelay protein LuxU -
  AT730_RS06045 (AT730_06030) luxO 1328286..1329692 (-) 1407 WP_064368650.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  AT730_RS06050 (AT730_06035) uvrB 1329984..1332014 (-) 2031 WP_017636056.1 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52120.78 Da        Isoelectric Point: 6.2547

>NTDB_id=162993 AT730_RS06045 WP_064368650.1 1328286..1329692(-) (luxO) [Vibrio alginolyticus strain ATCC 33787]
MQQKPEGPKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQSYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFIRFAPDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPL
SVAKLIEPKAMTASEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=162993 AT730_RS06045 WP_064368650.1 1328286..1329692(-) (luxO) [Vibrio alginolyticus strain ATCC 33787]
ATGCAACAAAAACCCGAAGGCCCAAAGTCTCGTTACCTTTTAATGGTCGAGGACACCGCATCTGTTGCGGCTCTGTACCG
CTCATACCTGACACCGCTTGGCATAGATATCAATATTGTCGGCACAGGTAGGGATGCCATTGAGAGCCTAAATCATCGAA
TTCCAGATCTTATTTTACTCGATCTCCGTCTGCCAGATATGACGGGGATGGACGTTTTACATGCCGTTAAAAAGAGTCAT
CCCGACGTACCTATAATCTTTATGACCGCTCACGGTTCTATCGATACCGCTGTCGAGGCCATGCGTCATGGCTCACAAGA
CTTTCTAATTAAACCGTGTGAAGCAGACCGTTTACGTGTCACGGTTAACAATGCAATTCGTAAAGCGACCAAGCTAAAAA
ATGAAGCCGATAATCCAGGCAATCAGAGCTATCAGGGGTTTATCGGCAGTAGCCAAACCATGCAGCAGGTTTACCGTACG
ATAGATTCCGCGGCGAGCAGTAAAGCGAGTATTTTTATCACTGGTGAAAGTGGTACTGGTAAAGAGGTATGTGCCGAGGC
AATCCACGCAGCAAGTAAACGTGGTGACAAACCTTTTATTGCAATTAACTGTGCTGCAATTCCAAAAGATTTGATTGAGA
GTGAACTGTTTGGTCACGTAAAAGGGGCCTTTACTGGCGCTGCGAATGATCGTCAAGGGGCAGCTGAGTTAGCGGATGGC
GGCACACTTTTTCTAGATGAGCTTTGTGAGATGGACTTGGATTTACAAACCAAGTTGCTACGATTTATTCAAACGGGCAC
ATTCCAAAAAGTGGGTTCCTCAAAAATGAAGAGCGTGGATGTGCGCTTTGTTTGTGCCACTAACCGTGATCCTTGGAAAG
AGGTACAAGAAGGTCGATTCCGTGAAGATTTGTACTATCGTTTGTATGTCATTCCTTTGCATTTACCGCCTTTACGCGAA
CGAGGCGAAGATGTTATTGAAATTGCATACTCACTGTTAGGTTACATGTCACACGAAGAAGGAAAAAGCTTCATACGTTT
TGCGCCTGATGTCATCGAGCGATTCAACAGCTATGAGTGGCCGGGTAACGTTCGTCAGTTACAAAACGTGCTACGCAATA
TCGTTGTTCTAAACAACGGTAAAGAGATTACGTTGGACATGTTACCGCCACCGTTGAATCAACCGCTTGACCGTCCGTTG
TCTGTGGCTAAATTAATTGAGCCGAAAGCGATGACCGCATCTGAGATTATGCCATTATGGATGACGGAAAAAATGGCAAT
CGAGCAAGCGATTGAAGCATGTGATGGCAATATTCCTCGAGCGGCGGGATACCTTGATGTCAGTCCGTCGACGATTTACC
GCAAGTTACAGGCATGGAACGGCAAGGAAGAGCGGCAAAAAGTATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.637

95.94

0.831

Multiple sequence alignment