Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   AT302_RS02985 Genome accession   NZ_CP013480
Coordinates   655895..657385 (-) Length   496 a.a.
NCBI ID   WP_058377149.1    Uniprot ID   A0A5E4SLY1
Organism   Pandoraea norimbergensis strain DSM 11628     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 650895..662385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT302_RS02955 (AT302_11045) mutY 650993..652120 (+) 1128 WP_084655993.1 A/G-specific adenine glycosylase -
  AT302_RS02960 (AT302_11050) rapZ 652142..653014 (-) 873 WP_058377144.1 RNase adapter RapZ -
  AT302_RS02965 (AT302_11055) - 653195..653524 (-) 330 WP_058377145.1 PsiF family protein -
  AT302_RS02970 (AT302_11060) hprK 653679..654644 (-) 966 WP_058377146.1 HPr(Ser) kinase/phosphatase -
  AT302_RS02975 (AT302_11065) ptsN 654709..655164 (-) 456 WP_058377147.1 PTS IIA-like nitrogen regulatory protein PtsN -
  AT302_RS02980 (AT302_11070) hpf 655401..655754 (-) 354 WP_058377148.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  AT302_RS02985 (AT302_11075) rpoN/rpoN1 655895..657385 (-) 1491 WP_058377149.1 RNA polymerase factor sigma-54 Machinery gene
  AT302_RS02990 (AT302_11080) lptB 657480..658232 (-) 753 WP_058380055.1 LPS export ABC transporter ATP-binding protein -
  AT302_RS02995 (AT302_11085) lptA 658276..659016 (-) 741 WP_084655994.1 lipopolysaccharide transport periplasmic protein LptA -
  AT302_RS03000 (AT302_11090) lptC 659013..659699 (-) 687 WP_058377150.1 LPS export ABC transporter periplasmic protein LptC -
  AT302_RS03005 (AT302_11095) - 659722..660207 (-) 486 WP_058380057.1 HAD family hydrolase -
  AT302_RS03010 (AT302_11100) - 660333..661313 (-) 981 WP_058377151.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55297.12 Da        Isoelectric Point: 5.1828

>NTDB_id=162938 AT302_RS02985 WP_058377149.1 655895..657385(-) (rpoN/rpoN1) [Pandoraea norimbergensis strain DSM 11628]
MKPTLQLRTSQHLTLTPQLQQSIRLLQLSTLELQQEVEHALTQNPMLEREDDWLAGSVRVGTDGSLRNERTTSVSSTNDA
PSEGNGHDEARELDGEARFDDNGQDSGSDWSLNDFARTGNATDDDDNNSRPQLHVDHPNLREHLLAQLRVTKAAPRDRAL
VEFLIESLDEDGYLGTTLDEIQAEVAEELSLEAEEINAALALLQSFDPAGVGARTPSECLRLQLQRLPASPVRTISLRIV
SDHLELLAARDYTRLRRVLGVGEDSLRAAHQLIRSLDPFPGAAYGTPQADYVIPDVLVRRQGSGWTAELNPEVMPRLRIN
EMYARILRNNRNDPGTGNLQQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFSHGEIGMRPLVLREIADTLGLHEST
ISRVTTSKYMLTPFGTFELKYFFGSHVATEAGGAASSTAIRALIKQLIGAEDPQSPLSDSRIAELLAEQGFVVARRTVAK
YREAMRIPAVNLRKSL

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=162938 AT302_RS02985 WP_058377149.1 655895..657385(-) (rpoN/rpoN1) [Pandoraea norimbergensis strain DSM 11628]
ATGAAACCGACCCTCCAACTCCGCACCTCGCAGCACCTGACCCTCACCCCCCAGTTGCAACAATCGATCCGGTTGCTGCA
ACTGTCGACGCTCGAACTTCAGCAGGAAGTCGAGCATGCCCTCACCCAGAACCCGATGCTCGAGCGCGAAGACGACTGGC
TCGCCGGGTCCGTGCGCGTCGGCACCGACGGCTCGCTTCGCAATGAACGCACGACATCGGTCAGCAGCACGAACGACGCG
CCGTCAGAGGGTAACGGTCACGACGAGGCACGCGAGCTCGATGGCGAAGCGCGCTTCGACGATAACGGCCAGGACAGCGG
CAGCGACTGGAGCCTGAACGACTTCGCCCGCACGGGCAATGCCACCGACGACGACGACAACAACTCGCGCCCGCAACTGC
ACGTCGATCATCCGAATCTGCGTGAACACCTGCTGGCCCAGTTGCGCGTGACCAAGGCCGCGCCGCGCGATCGCGCGCTG
GTGGAGTTTCTGATCGAGTCGCTCGACGAAGACGGTTATTTGGGCACCACGCTCGATGAAATTCAGGCGGAAGTGGCCGA
AGAGTTGTCGCTGGAAGCCGAAGAGATCAATGCCGCGCTGGCGCTGCTGCAAAGCTTCGACCCGGCCGGCGTCGGCGCGC
GCACCCCGTCCGAATGCCTGCGGCTGCAATTGCAGCGGCTGCCTGCGAGCCCGGTGCGCACGATTTCGCTGCGCATCGTC
TCCGATCACCTGGAACTGCTTGCCGCACGTGACTACACGCGACTGCGCCGTGTACTCGGTGTCGGCGAAGACAGCCTGCG
CGCCGCGCATCAGCTCATTCGCTCGCTCGACCCGTTTCCGGGGGCCGCCTACGGCACGCCGCAGGCCGACTACGTCATTC
CCGACGTCCTCGTGCGCCGGCAGGGCAGCGGCTGGACGGCGGAGCTCAATCCCGAGGTGATGCCGCGTCTGCGCATCAAT
GAGATGTATGCGCGAATTCTGCGAAATAATCGCAACGATCCGGGCACCGGGAACCTCCAACAGCAATTGCAGGAAGCGCG
CTGGCTGATCAAGAACATTCAGCAGCGTTTCGACACGATCCTGCGGGTCGCGCAGGCGATTGTCGAGCGTCAAAAGAACT
TCTTCTCCCACGGCGAAATCGGCATGCGCCCCTTGGTTTTGCGCGAGATTGCTGATACGCTGGGTTTACACGAATCCACG
ATTTCGCGGGTGACAACCAGTAAGTACATGCTCACTCCATTTGGAACTTTCGAGCTCAAGTACTTCTTTGGTTCTCACGT
CGCGACGGAAGCCGGAGGGGCCGCGTCATCCACGGCCATCCGTGCCCTCATCAAGCAACTGATAGGAGCCGAAGACCCGC
AGAGCCCCCTTTCCGACAGCCGTATCGCGGAACTGCTGGCAGAGCAAGGTTTTGTGGTGGCGCGACGCACTGTCGCGAAA
TACCGCGAAGCCATGCGAATTCCCGCAGTCAACTTGCGCAAATCTTTGTAG

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(339-494)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(134-323)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

66.534

100

0.673

Multiple sequence alignment