Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   A6L42_RS10515 Genome accession   NZ_CP016671
Coordinates   2015676..2016182 (-) Length   168 a.a.
NCBI ID   WP_002258727.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22783     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2010676..2021182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L42_RS10505 (A6L42_10505) - 2011001..2012008 (+) 1008 WP_002237360.1 IS5 family transposase -
  A6L42_RS10510 (A6L42_10510) polA 2012735..2015530 (-) 2796 WP_002237359.1 DNA polymerase I -
  A6L42_RS10515 (A6L42_10515) luxS 2015676..2016182 (-) 507 WP_002258727.1 S-ribosylhomocysteine lyase Regulator
  A6L42_RS10520 (A6L42_10520) - 2016204..2016623 (-) 420 WP_002219899.1 DUF2251 domain-containing protein -
  A6L42_RS10525 (A6L42_10525) - 2016649..2017665 (-) 1017 WP_002219898.1 YeiH family protein -
  A6L42_RS10530 (A6L42_10530) cyaY 2017692..2018015 (-) 324 WP_002219897.1 iron donor protein CyaY -
  A6L42_RS10535 (A6L42_10535) lptM 2018066..2018257 (+) 192 WP_002258726.1 LPS translocon maturation chaperone LptM -
  A6L42_RS10540 (A6L42_10540) lysA 2018268..2019488 (+) 1221 WP_002258725.1 diaminopimelate decarboxylase -
  A6L42_RS13235 - 2019548..2019640 (-) 93 WP_002233157.1 methionine/alanine import family NSS transporter small subunit -
  A6L42_RS10545 (A6L42_10545) - 2019637..2021172 (-) 1536 WP_002258724.1 sodium-dependent transporter -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18697.44 Da        Isoelectric Point: 5.5451

>NTDB_id=162922 A6L42_RS10515 WP_002258727.1 2015676..2016182(-) (luxS) [Neisseria meningitidis strain M22783]
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCIPNKEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMQDVANVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLARKVAVNKNEELT
LDEGLLNA

Nucleotide


Download         Length: 507 bp        

>NTDB_id=162922 A6L42_RS10515 WP_002258727.1 2015676..2016182(-) (luxS) [Neisseria meningitidis strain M22783]
ATGCCCCTACTAGACAGTTTCAAAGTCGATCACACCCGTATGCACGCCCCCGCCGTACGCGTGGCGAAAACCATGACCAC
GCCCAAAGGCGACACCATTACCGTGTTTGACCTGCGTTTCTGCATTCCCAACAAAGAAATCCTGCCCGAAAAAGGCATCC
ACACGCTGGAGCATTTGTTCGCCGGTTTTATGCGCGATCACTTGAACGGCAACGGCGTGGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACAGGTTTCTACATGAGCCTCATCGGTACGCCTTCCGAACAGCAGGTCGCCGATGCGTGGCTGGCTTC
GATGCAGGATGTGGCCAATGTCAAAGACCAAAGCAAAATCCCCGAGTTGAACGAATACCAATGCGGCACTTACCAAATGC
ACTCGCTCGCCGAAGCGCAACAAATCGCGCAAAACGTGTTGGCGCGCAAAGTGGCGGTGAACAAAAATGAAGAGCTGACG
CTGGATGAAGGGCTGCTGAACGCCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

76.647

99.405

0.762