Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AT726_RS06520 Genome accession   NZ_CP013476
Coordinates   1360939..1362327 (+) Length   462 a.a.
NCBI ID   WP_068759265.1    Uniprot ID   A0A0X1TKM2
Organism   Turicibacter sp. H121     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1355939..1367327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT726_RS06500 (AT726_06475) - 1357599..1357928 (+) 330 WP_055243496.1 hypothetical protein -
  AT726_RS06505 (AT726_06480) - 1358331..1358840 (+) 510 WP_055243497.1 sigma-70 family RNA polymerase sigma factor -
  AT726_RS06510 (AT726_06485) - 1358844..1359401 (+) 558 WP_068759264.1 hypothetical protein -
  AT726_RS06515 (AT726_06490) hflX 1359441..1360706 (-) 1266 WP_055275505.1 GTPase HflX -
  AT726_RS06520 (AT726_06495) radA 1360939..1362327 (+) 1389 WP_068759265.1 DNA repair protein RadA Machinery gene
  AT726_RS06525 (AT726_06500) - 1362360..1363193 (+) 834 WP_068759266.1 DUF4349 domain-containing protein -
  AT726_RS06530 (AT726_06505) - 1363208..1364227 (+) 1020 WP_068759267.1 YobA family protein -
  AT726_RS06535 (AT726_06510) - 1364260..1365480 (-) 1221 WP_068759268.1 cation:proton antiporter -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50945.81 Da        Isoelectric Point: 7.9828

>NTDB_id=162826 AT726_RS06520 WP_068759265.1 1360939..1362327(+) (radA) [Turicibacter sp. H121]
MAKARTKTSFFCQQCGTESLKWVGRCPGCGEWNTMVEELKPTKAEQRRGFVASESMAKPQRLQEIETKEEARIQTSMSEL
NRVLGGGIVRGSLVLCGGEPGIGKSTLLLQTAQDLAHKNVQVLYVSGEESARQIKLRAERLGVSSEHLYIYAETDLTLIE
RQIQQLKPEFVIIDSIQTIHMPEVTSAPGSVSQVRECTAQLMKIAKIGGISVFIVGHVTKDGNIAGPRLLEHMVDTVLYF
EGDRHHTYRILRAVKNRFGSTNEIGIFDMKEEGLDEVTNASEVFLEDRTKGLPGTAIMASIEGTRPILVEIQSLLTPTSF
GNPKRMASGVDHNRVSLILAVLEKRMGFFLQNQDTYVKVTGGVKLDEPAVDLAIVASIVSSYKDKMTPSGDVYMGEVGLT
GEIRRVSRIEERVKEAKKLGFTRAIIPKKNIGGWTAPKGMEIVGVDTISDALKAMFKDDLKF

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=162826 AT726_RS06520 WP_068759265.1 1360939..1362327(+) (radA) [Turicibacter sp. H121]
ATGGCGAAAGCAAGAACAAAAACATCATTTTTCTGTCAGCAATGTGGGACAGAAAGTTTAAAATGGGTCGGAAGATGTCC
AGGTTGTGGCGAATGGAATACGATGGTGGAGGAATTAAAGCCCACAAAGGCAGAACAGCGCCGTGGCTTTGTAGCAAGTG
AAAGTATGGCAAAACCTCAACGTCTACAAGAGATAGAAACAAAAGAGGAAGCACGTATTCAGACATCAATGAGTGAGCTT
AACCGTGTTCTTGGTGGTGGAATTGTTCGTGGATCACTTGTTCTGTGTGGGGGTGAGCCTGGGATTGGGAAATCAACACT
ACTTTTACAAACGGCACAAGATTTAGCGCATAAAAATGTTCAAGTATTATATGTTTCAGGAGAAGAATCTGCTCGTCAAA
TTAAACTTCGTGCTGAGCGTTTAGGAGTAAGTAGCGAGCACTTATATATTTACGCAGAAACAGATTTAACTTTAATTGAA
CGTCAAATTCAACAGTTAAAACCAGAGTTTGTCATTATCGACTCGATTCAGACGATTCATATGCCAGAGGTAACATCGGC
ACCTGGGAGTGTCTCGCAAGTTCGTGAATGTACGGCCCAATTGATGAAAATTGCTAAAATTGGTGGAATTTCAGTCTTTA
TTGTCGGACATGTGACGAAAGATGGAAATATCGCTGGGCCACGTTTACTCGAGCATATGGTGGATACTGTCTTATATTTT
GAAGGAGATCGTCATCATACGTATCGTATTTTACGAGCAGTTAAAAACCGATTTGGGTCAACGAATGAGATTGGAATCTT
TGATATGAAAGAAGAGGGGCTTGATGAAGTGACGAATGCTTCAGAGGTCTTCTTAGAAGATCGCACGAAAGGATTACCAG
GAACGGCGATTATGGCATCAATTGAAGGAACACGTCCAATCTTAGTTGAGATTCAATCATTATTAACGCCGACTTCATTT
GGTAATCCAAAACGAATGGCATCTGGAGTGGATCATAATCGTGTATCTTTGATTTTAGCTGTGCTTGAAAAACGTATGGG
ATTCTTCTTACAAAATCAAGATACATATGTAAAAGTAACTGGTGGTGTAAAGTTAGATGAACCGGCTGTCGATTTAGCGA
TTGTGGCAAGTATTGTTTCAAGTTATAAAGATAAGATGACGCCAAGTGGCGATGTATATATGGGAGAGGTTGGATTAACC
GGTGAAATTCGACGTGTCTCTCGTATCGAAGAGCGTGTCAAAGAAGCGAAAAAACTTGGGTTTACGCGCGCAATTATTCC
AAAGAAAAATATAGGTGGATGGACAGCTCCAAAAGGAATGGAGATTGTTGGGGTTGATACCATTTCGGATGCACTTAAAG
CAATGTTTAAAGATGATTTGAAGTTCTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(61-222)

Subunit ChlI of Mg-chelatase (ChlI)

(346-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(11-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X1TKM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.265

97.835

0.639
  radA Streptococcus mitis NCTC 12261

58.72

98.052

0.576
  radA Streptococcus pneumoniae Rx1

58.72

98.052

0.576
  radA Streptococcus pneumoniae D39

58.72

98.052

0.576
  radA Streptococcus pneumoniae R6

58.72

98.052

0.576
  radA Streptococcus pneumoniae TIGR4

58.72

98.052

0.576
  radA Streptococcus mitis SK321

58.499

98.052

0.574

Multiple sequence alignment