Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AT726_RS05265 Genome accession   NZ_CP013476
Coordinates   1074761..1075717 (-) Length   318 a.a.
NCBI ID   WP_068759192.1    Uniprot ID   -
Organism   Turicibacter sp. H121     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1069761..1080717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT726_RS05250 (AT726_05225) - 1072060..1073034 (-) 975 WP_055242426.1 siderophore ABC transporter substrate-binding protein -
  AT726_RS05255 (AT726_05230) - 1073072..1073827 (-) 756 WP_068759190.1 ABC transporter ATP-binding protein -
  AT726_RS05260 (AT726_05235) - 1073824..1074774 (-) 951 WP_068759191.1 iron chelate uptake ABC transporter family permease subunit -
  AT726_RS05265 (AT726_05240) ceuB 1074761..1075717 (-) 957 WP_068759192.1 ABC transporter permease Machinery gene
  AT726_RS05270 (AT726_05245) - 1075935..1076306 (+) 372 WP_055242418.1 AraC family transcriptional regulator -
  AT726_RS05275 (AT726_05250) - 1076336..1077619 (-) 1284 WP_055305035.1 ectonucleotide pyrophosphatase/phosphodiesterase -
  AT726_RS12820 - 1077786..1077962 (+) 177 WP_156343902.1 hypothetical protein -
  AT726_RS05280 (AT726_05255) - 1078007..1078309 (-) 303 WP_055242414.1 hypothetical protein -
  AT726_RS05285 (AT726_05260) hslO 1078326..1079195 (-) 870 WP_055277014.1 Hsp33 family molecular chaperone HslO -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34650.65 Da        Isoelectric Point: 9.2995

>NTDB_id=162824 AT726_RS05265 WP_068759192.1 1074761..1075717(-) (ceuB) [Turicibacter sp. H121]
MKKRYLATLLIILSVISVFIGAGEVTLSAILNGDSHQLYILFVSRIPRLLSVCVTGIGMSICGLIMQQLTRNKFVSPTTA
ATMDFAKLGMLIAMVFFAGASLVHKMLFAFICSLFGTFLFMGIMKQVKFQNSLFIPLIGMMLGNVVNSITSFIASQFDLV
QNISSWAQGDFTNIMKGNYELLYLSIPLVVVAFLYANKFTIAGMGEDFSTNLGLNHKWIVNVGLTIVALITSVIIITIGS
IPFIGLIVPNIVSMYLGDNLKHSLGHTALLGAVFLLICDVIGRLVIYPYEVSIGLTVGIIGSVIFLYMLMRRDSNASA

Nucleotide


Download         Length: 957 bp        

>NTDB_id=162824 AT726_RS05265 WP_068759192.1 1074761..1075717(-) (ceuB) [Turicibacter sp. H121]
TTGAAGAAGAGATATTTAGCAACTTTGCTTATCATCTTATCCGTCATTTCCGTGTTTATTGGAGCCGGTGAAGTGACACT
ATCAGCAATTTTAAATGGCGATAGTCATCAATTATATATTTTATTTGTCAGTCGTATACCACGTTTATTAAGTGTTTGTG
TAACTGGGATTGGAATGAGTATCTGCGGTTTAATTATGCAGCAGCTGACAAGAAATAAATTTGTTTCACCAACGACAGCA
GCAACGATGGATTTTGCAAAGTTAGGAATGTTAATTGCAATGGTATTCTTTGCAGGGGCTTCACTCGTCCATAAGATGCT
GTTTGCTTTTATTTGTTCATTATTTGGAACATTTTTATTTATGGGGATTATGAAGCAAGTAAAATTTCAAAATTCCTTAT
TTATTCCGTTAATCGGGATGATGCTTGGAAATGTCGTCAATTCGATCACAAGCTTTATTGCTTCTCAGTTTGATCTTGTA
CAAAATATTTCTTCTTGGGCACAGGGAGATTTCACGAACATCATGAAAGGAAATTATGAGTTACTTTATTTAAGTATTCC
TCTTGTTGTTGTCGCTTTCTTATATGCCAATAAATTTACGATTGCTGGGATGGGAGAAGATTTTTCAACTAATCTAGGGC
TTAATCATAAATGGATTGTCAATGTAGGATTAACGATTGTCGCTTTAATTACATCGGTCATCATTATTACCATTGGGTCG
ATTCCGTTTATCGGATTAATTGTTCCAAATATTGTATCGATGTACTTAGGCGATAACTTAAAACATAGTTTAGGACATAC
TGCATTACTAGGAGCAGTATTCTTACTGATTTGTGATGTGATTGGACGCTTAGTCATTTATCCGTATGAAGTATCGATTG
GATTAACTGTTGGAATTATCGGAAGTGTCATTTTCTTATACATGTTGATGAGGAGGGATTCAAATGCGTCGGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.84

98.428

0.491

Multiple sequence alignment