Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   A6M04_RS07915 Genome accession   NZ_CP016668
Coordinates   1530569..1531075 (+) Length   168 a.a.
NCBI ID   WP_002218101.1    Uniprot ID   A1KW60
Organism   Neisseria meningitidis strain M25472     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1525569..1536075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M04_RS07885 (A6M04_07885) - 1525797..1526405 (+) 609 WP_109535434.1 IS1595 family transposase -
  A6M04_RS07890 (A6M04_07890) - 1526618..1528153 (+) 1536 WP_002221654.1 sodium-dependent transporter -
  A6M04_RS12550 - 1528150..1528242 (+) 93 WP_002233157.1 methionine/alanine import family NSS transporter small subunit -
  A6M04_RS07895 (A6M04_07895) lysA 1528278..1529522 (-) 1245 WP_002224130.1 diaminopimelate decarboxylase -
  A6M04_RS07900 (A6M04_07900) lptM 1529533..1529703 (-) 171 WP_002219896.1 LPS translocon maturation chaperone LptM -
  A6M04_RS07905 (A6M04_07905) cyaY 1529774..1530097 (+) 324 WP_002219897.1 iron donor protein CyaY -
  A6M04_RS07910 (A6M04_07910) - 1530128..1530547 (+) 420 WP_002218100.1 DUF2251 domain-containing protein -
  A6M04_RS07915 (A6M04_07915) luxS 1530569..1531075 (+) 507 WP_002218101.1 S-ribosylhomocysteine lyase Regulator
  A6M04_RS07920 (A6M04_07920) polA 1531221..1534013 (+) 2793 WP_002224673.1 DNA polymerase I -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18683.41 Da        Isoelectric Point: 5.5451

>NTDB_id=162707 A6M04_RS07915 WP_002218101.1 1530569..1531075(+) (luxS) [Neisseria meningitidis strain M25472]
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCIPNKEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMQDVGNVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLARKVAVNKNEELT
LDEGLLNA

Nucleotide


Download         Length: 507 bp        

>NTDB_id=162707 A6M04_RS07915 WP_002218101.1 1530569..1531075(+) (luxS) [Neisseria meningitidis strain M25472]
ATGCCCCTACTAGACAGTTTCAAAGTCGATCACACCCGTATGCATGCCCCCGCCGTACGCGTGGCGAAAACCATGACCAC
GCCCAAAGGCGACACCATTACCGTGTTCGACCTGCGCTTTTGCATTCCCAACAAAGAAATCCTGCCTGAAAAAGGCATAC
ACACGCTGGAGCATTTGTTCGCAGGTTTTATGCGCGACCACTTGAACGGCAACGGCGTGGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACCGGTTTCTACATGAGCCTTATCGGCACGCCTTCCGAACAGCAGGTCGCCGATGCATGGCTCGCCTC
GATGCAGGATGTGGGCAATGTCAAAGACCAAAGCAAAATCCCCGAGTTGAACGAATACCAATGCGGCACTTATCAAATGC
ACTCGCTCGCCGAAGCGCAGCAAATCGCGCAAAACGTGTTGGCGCGCAAAGTGGCGGTGAACAAAAACGAAGAGCTGACG
CTGGATGAAGGGCTGCTGAACGCCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1KW60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

76.647

99.405

0.762