Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   WS51_RS24325 Genome accession   NZ_CP013366
Coordinates   2998125..2999630 (+) Length   501 a.a.
NCBI ID   WP_059451453.1    Uniprot ID   -
Organism   Burkholderia territorii strain RF8-non-BP5     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2993125..3004630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WS51_RS24300 (WS51_24285) kdsD 2994361..2995344 (+) 984 WP_059451449.1 arabinose 5-phosphate isomerase KdsD -
  WS51_RS24305 (WS51_24290) - 2995344..2995880 (+) 537 WP_059451450.1 KdsC family phosphatase -
  WS51_RS24310 (WS51_24295) lptC 2995884..2996498 (+) 615 WP_059451451.1 LPS export ABC transporter periplasmic protein LptC -
  WS51_RS24315 (WS51_24300) lptA 2996519..2997184 (+) 666 WP_059507771.1 lipopolysaccharide transport periplasmic protein LptA -
  WS51_RS24320 (WS51_24305) lptB 2997181..2997957 (+) 777 WP_044847462.1 LPS export ABC transporter ATP-binding protein -
  WS51_RS24325 (WS51_24310) rpoN/rpoN1 2998125..2999630 (+) 1506 WP_059451453.1 RNA polymerase factor sigma-54 Machinery gene
  WS51_RS24330 (WS51_24315) hpf 2999790..3000149 (+) 360 WP_006477786.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  WS51_RS24335 (WS51_24320) - 3000319..3000858 (+) 540 WP_059598834.1 PTS sugar transporter subunit IIA -
  WS51_RS24340 (WS51_24325) hprK 3000978..3001946 (+) 969 WP_006483133.1 HPr(Ser) kinase/phosphatase -
  WS51_RS24345 (WS51_24330) rapZ 3002022..3002930 (+) 909 WP_059451454.1 RNase adapter RapZ -
  WS51_RS24350 (WS51_24335) - 3002957..3003592 (+) 636 WP_059451455.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 54679.87 Da        Isoelectric Point: 4.8740

>NTDB_id=162318 WS51_RS24325 WP_059451453.1 2998125..2999630(+) (rpoN/rpoN1) [Burkholderia territorii strain RF8-non-BP5]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLENDDEWIASPLRVAADGSLIAQTPAGQNAEPGA
VNGSSQSGDRAERDEPAAADEYDGYASGDAGDGPQWNLDEFGRSSGASDDDDLPPLQVQEAATSLRDHLSAQLRVTQAGP
RDRALVMFLIESLDDDGYLTASLDEVLADLPPELEIDCDELNAALALLHSFDPPGVGARSASECLKLQLLRLDPSPTRTL
ALEIVSQHLELLAARDFTRLRKHLKASDDALRDAHALIRSLEPFPGAAYGKAEADYVVPDIIVKKAGQGWLAELNPEVMP
RLRINNLYANILRNSRGDPSAGSLKQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLG
LHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVAR
RTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=162318 WS51_RS24325 WP_059451453.1 2998125..2999630(+) (rpoN/rpoN1) [Burkholderia territorii strain RF8-non-BP5]
ATGAAAGCCAGCCTTCAACTCCGCCTGTCGCAACACCTGGCACTGACACCGCAACTGCAGCAGTCGATCCGGCTCCTGCA
GCTGTCGACGCTCGAACTGCAGCAGGAAGTCGCGATGGCCGTCGCGCAGAATCCGCTGCTCGAGAACGATGACGAATGGA
TCGCGAGCCCGCTGCGTGTCGCGGCGGACGGGTCGCTGATCGCGCAGACGCCTGCCGGCCAGAACGCCGAGCCGGGCGCC
GTGAACGGCAGCAGCCAGTCGGGCGATCGCGCCGAGCGCGACGAGCCGGCCGCTGCCGACGAATACGACGGCTACGCCTC
GGGCGACGCCGGCGACGGCCCGCAATGGAATCTCGACGAGTTCGGCCGCTCGAGCGGCGCGTCGGACGACGACGACCTCC
CGCCGCTGCAGGTTCAGGAAGCCGCGACGTCGCTGCGCGACCACCTGTCCGCGCAATTGCGCGTCACGCAGGCCGGCCCG
CGCGATCGCGCGCTCGTGATGTTCCTGATCGAATCGCTCGACGACGACGGCTACCTGACCGCCTCCCTCGACGAAGTCCT
CGCCGACCTGCCGCCGGAACTGGAAATCGACTGCGACGAACTGAACGCGGCGCTTGCGCTGCTGCACAGTTTCGATCCGC
CCGGGGTCGGGGCCCGCTCGGCGTCCGAATGCCTGAAGCTGCAGCTGCTGCGACTCGATCCGTCCCCCACCCGCACGCTC
GCGCTGGAGATCGTGTCGCAGCATCTCGAGTTGCTCGCCGCGCGCGATTTCACGCGGCTGCGCAAGCATCTGAAGGCGAG
CGACGACGCGCTGCGCGACGCGCACGCGCTGATCCGTTCGCTGGAGCCGTTCCCCGGCGCCGCATACGGCAAGGCCGAGG
CCGACTACGTCGTGCCCGACATCATCGTGAAAAAGGCCGGCCAGGGCTGGCTCGCGGAACTCAATCCGGAAGTGATGCCG
CGCCTGCGGATCAACAACCTGTACGCGAACATCCTGCGCAACAGCCGCGGCGATCCGTCGGCCGGATCGCTGAAACAGCA
GCTCCAGGAAGCACGCTGGCTGATCAAGAACATCCAGCAGCGATTCGACACGATCCTGCGTGTCGCGCAGGCTATTGTCG
AGCGTCAGAAGAATTTCTTTGCGCACGGTGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACGCTGGGC
CTACACGAGTCGACTGTCAGCCGTGTGACAACCGGCAAGTACATGCTGACCCCGTTCGGGACGCTTGAATTTAAGTACTT
CTTCGGATCACACGTTTCGACCGACACCGGAGGCGCCGCATCGTCGACCGCCATCCGAGCCCTGATCAAGCAACTGATAG
GAGCTGAAGACCCAAAATCGCCACTTTCGGACAGCCGCATTGCCGAGCTGCTGGCAGAACAGGGATTCGTGGTCGCGCGC
CGCACGGTTGCCAAGTATCGCGAAGCCCTCAAAATCCCGGCAGTGAATCTGCGCAAGTCTCTTTAA

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(344-499)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(137-328)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.182

100

0.689

Multiple sequence alignment