Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Lupro_RS08145 Genome accession   NZ_CP013355
Coordinates   1836982..1838340 (+) Length   452 a.a.
NCBI ID   WP_068208502.1    Uniprot ID   A0A0X8G6Y7
Organism   Lutibacter profundi strain LP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1831982..1843340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Lupro_RS08120 (Lupro_08095) - 1832269..1833792 (-) 1524 WP_068208487.1 DUF4270 domain-containing protein -
  Lupro_RS08125 (Lupro_08100) - 1833820..1834626 (-) 807 WP_068208490.1 glycogen/starch synthase -
  Lupro_RS08130 (Lupro_08105) panC 1834734..1835573 (+) 840 WP_068208494.1 pantoate--beta-alanine ligase -
  Lupro_RS08135 (Lupro_08110) panD 1835612..1835962 (+) 351 WP_068208497.1 aspartate 1-decarboxylase -
  Lupro_RS08140 (Lupro_08115) - 1835964..1836938 (+) 975 WP_068208499.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  Lupro_RS08145 (Lupro_08120) radA 1836982..1838340 (+) 1359 WP_068208502.1 DNA repair protein RadA Machinery gene
  Lupro_RS08150 (Lupro_08125) - 1838391..1839137 (-) 747 WP_068208504.1 uroporphyrinogen-III synthase -
  Lupro_RS13945 (Lupro_08130) - 1839155..1839817 (-) 663 WP_068208507.1 DUF4271 domain-containing protein -
  Lupro_RS08160 (Lupro_08135) - 1839888..1840607 (+) 720 WP_068208511.1 polyprenol monophosphomannose synthase -
  Lupro_RS08165 (Lupro_08140) - 1840626..1841975 (+) 1350 WP_068208513.1 dihydroorotase -
  Lupro_RS08170 (Lupro_08145) - 1841968..1842438 (+) 471 WP_068208516.1 DUF4296 domain-containing protein -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 50203.00 Da        Isoelectric Point: 8.2277

>NTDB_id=162243 Lupro_RS08145 WP_068208502.1 1836982..1838340(+) (radA) [Lutibacter profundi strain LP1]
MAKTKTTFFCQNCGAQYAKWLGQCNSCHKWNTIVEEIIQKEEKRSWKQTTKTKRVSNALKINEIPFDKEDKISTKNNELN
RVLGGGLVKGSMLLLGGEPGIGKSTLLLQIALTLPKKVLYVSGEESQSQIKMRAERLQNSNTNCLILTETNTQNIFKVIE
EITPDVVVIDSIQTLYTEYIEASPGSISQIRETTAELIKFAKETATPVLLIGHITKDGNIAGPKILEHMVDVVLQFEGDR
NHTYRILRAIKNRFGSTAEIGIYEMQHTGLRQVENPSEILISQKEDNLSGTAIAATLEGVRPLMIEVQALVSTAVYGTPQ
RSSTGYDIKRLNMLLAVLEKRAGFRLGAKDVFLNIAGGIRVDDPAIDLAVISAILSSNEDIAIPQDFCFAAEIGLAGEIR
PISRVEQRILEAEKLGFHKIFISKFNKVNSSNHTIKIIKITKVEDVFSNLFI

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=162243 Lupro_RS08145 WP_068208502.1 1836982..1838340(+) (radA) [Lutibacter profundi strain LP1]
ATGGCTAAAACTAAAACAACTTTTTTTTGTCAAAATTGTGGCGCCCAATATGCAAAATGGTTAGGGCAATGTAACTCTTG
CCATAAATGGAATACAATTGTTGAGGAGATTATTCAAAAAGAAGAAAAAAGAAGTTGGAAACAAACTACCAAAACAAAAA
GAGTAAGCAATGCTTTAAAAATTAATGAAATCCCCTTCGATAAAGAAGACAAAATTTCAACAAAAAATAATGAGCTAAAC
AGAGTTTTAGGTGGGGGATTGGTAAAAGGGTCAATGCTTCTTTTGGGTGGTGAACCTGGTATTGGAAAATCTACTTTATT
ACTTCAAATTGCGCTAACACTCCCTAAAAAGGTATTATATGTTTCTGGCGAAGAAAGTCAATCTCAAATAAAAATGCGAG
CTGAACGATTACAAAACTCCAATACAAACTGTTTAATTTTAACCGAAACAAATACACAAAATATTTTTAAGGTTATTGAA
GAAATAACTCCTGATGTTGTTGTGATAGACTCTATTCAAACTTTATACACAGAATATATTGAAGCTTCTCCTGGTTCTAT
TTCACAAATTAGAGAAACAACTGCCGAACTTATTAAATTTGCCAAAGAAACGGCAACACCTGTACTTCTAATAGGGCATA
TAACAAAGGATGGCAATATTGCTGGCCCAAAAATATTAGAACATATGGTAGATGTTGTATTGCAATTTGAAGGCGACAGG
AATCATACATATAGAATACTACGTGCTATTAAAAATAGATTTGGATCTACTGCAGAGATTGGAATTTATGAAATGCAACA
TACGGGCTTACGCCAAGTTGAAAACCCTTCTGAAATTTTAATTTCTCAAAAAGAAGATAATTTGAGTGGTACTGCAATTG
CAGCTACATTAGAAGGTGTGAGGCCATTAATGATTGAAGTTCAAGCGTTGGTAAGCACAGCTGTTTATGGAACACCTCAG
CGTTCATCTACTGGTTATGATATAAAGAGGTTAAACATGCTTTTAGCTGTTTTAGAAAAACGTGCAGGGTTTAGGTTAGG
TGCAAAAGATGTTTTTTTAAATATTGCAGGAGGTATAAGAGTAGATGATCCTGCGATAGACTTGGCTGTAATAAGTGCTA
TTTTATCTTCAAATGAAGATATTGCAATTCCACAAGACTTTTGTTTTGCAGCTGAAATTGGTTTGGCTGGAGAAATTCGC
CCTATAAGTAGAGTAGAACAACGCATTTTAGAGGCTGAAAAACTAGGATTTCACAAAATATTTATTTCAAAATTTAACAA
GGTAAACAGCTCAAATCATACCATTAAAATTATAAAGATTACTAAGGTTGAAGATGTTTTCTCTAATTTATTTATATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(340-425)

AAA domain (AAA_25)

(69-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X8G6Y7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

48.238

100

0.485
  radA Streptococcus mitis SK321

48.238

100

0.485
  radA Streptococcus mitis NCTC 12261

48.238

100

0.485
  radA Streptococcus pneumoniae TIGR4

48.238

100

0.485
  radA Streptococcus pneumoniae D39

48.238

100

0.485
  radA Streptococcus pneumoniae R6

48.238

100

0.485
  radA Bacillus subtilis subsp. subtilis str. 168

50

95.133

0.476

Multiple sequence alignment