Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ATN79_RS01820 Genome accession   NZ_CP013347
Coordinates   402581..404101 (-) Length   506 a.a.
NCBI ID   WP_054929657.1    Uniprot ID   -
Organism   Paraburkholderia caribensis strain Bcrs1W     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 397581..409101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATN79_RS01795 (ATN79_01805) - 398358..398993 (-) 636 WP_054929655.1 LON peptidase substrate-binding domain-containing protein -
  ATN79_RS01800 (ATN79_01810) rapZ 399058..399951 (-) 894 WP_054929656.1 RNase adapter RapZ -
  ATN79_RS01805 (ATN79_01815) hprK 400029..400997 (-) 969 WP_007579699.1 HPr(Ser) kinase/phosphatase -
  ATN79_RS01810 (ATN79_01820) - 401231..401746 (-) 516 WP_028365018.1 PTS sugar transporter subunit IIA -
  ATN79_RS01815 (ATN79_01825) hpf 402046..402405 (-) 360 WP_012399744.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ATN79_RS01820 (ATN79_01830) rpoN/rpoN1 402581..404101 (-) 1521 WP_054929657.1 RNA polymerase factor sigma-54 Machinery gene
  ATN79_RS01825 (ATN79_01835) lptB 404342..405124 (-) 783 WP_035986723.1 LPS export ABC transporter ATP-binding protein -
  ATN79_RS01830 (ATN79_01840) lptA 405121..405798 (-) 678 WP_054929658.1 lipopolysaccharide transport periplasmic protein LptA -
  ATN79_RS01835 (ATN79_01845) lptC 405820..406425 (-) 606 WP_054929659.1 LPS export ABC transporter periplasmic protein LptC -
  ATN79_RS01840 (ATN79_01850) - 406422..406982 (-) 561 WP_062915104.1 KdsC family phosphatase -
  ATN79_RS01845 (ATN79_01855) kdsD 406982..407965 (-) 984 WP_054929661.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55526.41 Da        Isoelectric Point: 4.8325

>NTDB_id=162184 ATN79_RS01820 WP_054929657.1 402581..404101(-) (rpoN/rpoN1) [Paraburkholderia caribensis strain Bcrs1W]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVSMAIAQNPLLETEDDWIASPLRVAADGTVIAQTSQNTSPEEMS
GAPPSSSSSTSSGESQEGGEPQGVDEYNGMGSDANSDANQWNLDDYGRSGNASDDDDLPPLQIHESTTTLRDHLTAQLRV
TGASARDRALITFLIESLDDDGYLTATFDEILADLPEELEVDTDELNAALALLHSFDPAGVGARSASECLRLQLGRLEPS
PTRTLALDIVAHHLELLAARDFTRLRKYLKASDDDLREAHALIRSLEPFPGAAYGKAEADYVVPDIMVRKTAQGWQAELN
PEVVPKLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFAHGEIAMRPLVLREI
ADTLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDTKSPLSDSRIAELLAEQG
FVVARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=162184 ATN79_RS01820 WP_054929657.1 402581..404101(-) (rpoN/rpoN1) [Paraburkholderia caribensis strain Bcrs1W]
ATGAAAGCCAGCCTCCAACTTCGCCTGTCGCAGCATCTTGCGCTGACACCACAACTGCAACAGTCCATCCGGCTGCTGCA
GCTGTCTACGCTCGAACTGCAACAGGAAGTGTCGATGGCGATCGCCCAGAATCCGTTGCTCGAAACGGAGGACGACTGGA
TCGCGAGTCCGTTGCGCGTCGCCGCCGACGGCACTGTCATCGCGCAGACCTCGCAGAACACGTCGCCGGAAGAGATGTCG
GGCGCGCCGCCGTCCTCGTCGTCGTCGACGTCCTCCGGCGAAAGCCAGGAAGGCGGCGAGCCACAGGGTGTGGATGAATA
CAACGGCATGGGTTCGGATGCGAACTCGGACGCCAACCAGTGGAATCTCGACGACTACGGCCGTTCGGGCAACGCATCGG
ACGACGACGATCTGCCGCCGCTGCAAATCCACGAATCGACCACCACGCTGCGCGATCACCTGACTGCTCAACTTCGCGTA
ACGGGAGCAAGCGCACGGGACCGCGCGCTCATCACGTTCCTGATCGAATCGCTCGACGACGACGGCTATCTGACGGCCAC
CTTCGACGAAATCCTCGCCGATTTGCCCGAAGAACTCGAAGTCGATACCGACGAACTCAACGCGGCCCTCGCCTTGCTGC
ACAGCTTCGACCCAGCGGGGGTCGGCGCGCGTTCGGCGTCGGAATGCCTGCGTTTGCAGTTGGGCCGGCTCGAGCCGTCG
CCCACGCGCACGCTCGCGCTCGACATCGTCGCGCATCACCTGGAACTGCTCGCCGCACGCGACTTCACGCGACTGCGCAA
ATACCTGAAGGCAAGCGACGACGATCTGCGCGAAGCGCATGCGCTGATCCGCTCGCTGGAGCCGTTCCCCGGTGCGGCCT
ACGGCAAGGCCGAGGCGGACTACGTCGTGCCCGACATCATGGTGCGCAAAACGGCACAGGGATGGCAGGCCGAACTGAAT
CCGGAAGTCGTGCCGAAACTGCGTATCAACCATCTGTACGCGAATATCCTGCGCAACAATCGCGGCGATCCGGGCAGCGG
TTCGCTGCGGCAGCAACTGCAGGAAGCGCGTTGGCTGATCAAGAATATCCAGCAGCGCTTCGAGACGATCCTGCGTGTCG
CACAGGCAATTGTGGAGCGTCAAAAGAACTTTTTCGCCCACGGCGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATA
GCTGATACGCTGGGTTTACACGAGTCGACGGTCTCGCGTGTGACAACCGGCAAGTACATGCTCACCCCATTCGGGACGCT
TGAATTTAAGTACTTCTTCGGATCGCACGTGTCCACCGACACGGGGGGCGCGGCCTCTTCAACGGCCATTCGCGCACTCA
TCAAGCAACTGATAGGAGCGGAAGACACCAAATCTCCTCTTTCAGACAGCCGCATTGCCGAACTGCTGGCGGAACAGGGT
TTCGTCGTCGCTCGCCGTACCGTTGCGAAATACCGCGAAGCACTGAAAATCCCGGCAGTCAATCTGCGCAAGTCTCTTTA
G

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(143-333)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(349-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

66.996

100

0.67

Multiple sequence alignment