Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ATY38_RS15115 Genome accession   NZ_CP013341
Coordinates   3274251..3275699 (-) Length   482 a.a.
NCBI ID   WP_062560018.1    Uniprot ID   A0A1H2E3T7
Organism   Nitrosomonas ureae strain Nm10     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3269251..3280699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATY38_RS15080 (ATY38_15060) - 3269651..3269905 (+) 255 WP_062560013.1 Rho-binding antiterminator -
  ATY38_RS15085 (ATY38_15065) mutY 3269977..3271050 (+) 1074 WP_062560014.1 A/G-specific adenine glycosylase -
  ATY38_RS15090 (ATY38_15070) - 3271061..3271636 (+) 576 WP_235590332.1 5-formyltetrahydrofolate cyclo-ligase -
  ATY38_RS15095 (ATY38_15075) - 3271697..3272311 (-) 615 WP_062560240.1 flavin prenyltransferase UbiX -
  ATY38_RS15100 (ATY38_15080) hprK 3272371..3273333 (-) 963 WP_062560016.1 HPr(Ser) kinase/phosphatase -
  ATY38_RS15105 (ATY38_15085) - 3273320..3273787 (-) 468 WP_062560017.1 PTS sugar transporter subunit IIA -
  ATY38_RS15110 (ATY38_15090) hpf 3273909..3274232 (-) 324 WP_013647966.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ATY38_RS15115 (ATY38_15095) rpoN/rpoN1 3274251..3275699 (-) 1449 WP_062560018.1 RNA polymerase factor sigma-54 Machinery gene
  ATY38_RS15120 (ATY38_15100) lptB 3275754..3276476 (-) 723 WP_062560019.1 LPS export ABC transporter ATP-binding protein -
  ATY38_RS15125 (ATY38_15105) lptA 3276516..3277046 (-) 531 WP_062560020.1 lipopolysaccharide transport periplasmic protein LptA -
  ATY38_RS15130 (ATY38_15110) lptC 3277058..3277621 (-) 564 WP_062560021.1 LPS export ABC transporter periplasmic protein LptC -
  ATY38_RS15135 (ATY38_15115) nadA 3277842..3278945 (+) 1104 WP_418006927.1 quinolinate synthase -
  ATY38_RS15140 (ATY38_15120) clsB 3279018..3280190 (+) 1173 WP_082633059.1 cardiolipin synthase ClsB -

Sequence

Protein


Download         Length: 482 a.a.        Molecular weight: 54290.73 Da        Isoelectric Point: 5.0003

>NTDB_id=162168 ATY38_RS15115 WP_062560018.1 3274251..3275699(-) (rpoN/rpoN1) [Nitrosomonas ureae strain Nm10]
MKPTLQLKLTQQLKLTPQLQQSIRLLQLSTLELNQEIERIVQENPLLELRDDWSSSEANNSSESVESPRSVDSESASIEG
SESEADIVSEENFEPDSEWLQENSSAHNTFENDDWEALQVPDKPLSLRGHLNFQVSLSSISEYERKIIGLLIDSLNDDGY
LLQDLGELVDLLPAELGIDLQDLESALMHLQQYDPPGVGARDLKECLVLQLQALPGEVTYRAQAIKVVQEYLGILASHDF
AQVKKLLGCDDLTLKAIQKLITNLNPKPGIQFNFQSERYIIPDITVVKRNGVWLANLNMSAIPRLNINHLYANILKQEHH
SARGLISQLNEAKWLIKNVQQRSSTILKVAGVIVERQQQFFEHGEVAMRPLVLREIAETLNLHESTVSRVTTQKYMYTPR
GIFELKYFFGSHVSTDSGGACSATAIRALIKQLIQEENSKKPLSDNKISTILEQQGIVVARRTIAKYRESLQIPAANLRK
SI

Nucleotide


Download         Length: 1449 bp        

>NTDB_id=162168 ATY38_RS15115 WP_062560018.1 3274251..3275699(-) (rpoN/rpoN1) [Nitrosomonas ureae strain Nm10]
ATGAAGCCAACACTCCAACTCAAGCTGACTCAGCAACTGAAACTAACTCCTCAGTTACAGCAATCCATCCGACTGCTACA
GTTATCAACACTTGAGCTGAATCAAGAAATCGAGCGTATTGTGCAGGAAAATCCATTGTTGGAATTGCGCGATGACTGGA
GTTCATCTGAGGCGAATAATTCATCTGAATCTGTAGAATCTCCCCGTTCCGTAGATTCTGAAAGTGCTTCAATCGAAGGG
AGCGAATCTGAAGCCGATATTGTATCGGAAGAAAATTTTGAACCGGATTCTGAATGGTTACAAGAAAATAGTTCTGCTCA
TAATACCTTTGAGAATGATGATTGGGAAGCATTGCAGGTTCCTGATAAGCCACTAAGTTTGCGAGGACATTTGAATTTTC
AAGTGTCCTTAAGCTCAATCTCCGAGTATGAAAGAAAAATTATTGGGTTGTTGATTGACAGTTTGAATGACGATGGTTAT
TTATTGCAGGACTTGGGTGAACTGGTGGATTTGCTACCAGCAGAACTGGGGATTGATTTGCAGGATTTGGAAAGTGCGCT
CATGCACTTGCAGCAATATGATCCACCTGGTGTGGGTGCGCGTGATCTAAAGGAGTGCTTAGTATTGCAGCTGCAGGCAT
TACCAGGTGAAGTGACATACCGCGCCCAGGCTATAAAAGTTGTACAAGAATATTTAGGGATTCTGGCGTCACATGATTTC
GCGCAAGTCAAAAAGTTATTAGGATGTGATGATCTAACCCTAAAAGCTATCCAGAAACTGATTACCAATTTGAATCCTAA
GCCTGGTATTCAGTTTAATTTCCAGAGTGAACGCTACATTATTCCTGATATTACAGTTGTAAAAAGAAATGGAGTTTGGT
TGGCGAATCTTAATATGAGCGCAATTCCACGTCTCAATATTAATCATCTATATGCTAATATATTGAAACAAGAACATCAT
TCTGCACGTGGTCTCATAAGTCAGTTGAATGAAGCGAAATGGCTTATTAAAAATGTTCAGCAACGTTCAAGCACTATCCT
TAAAGTTGCTGGTGTAATTGTAGAACGTCAGCAGCAGTTTTTTGAACATGGAGAAGTTGCGATGCGCCCGCTTGTGCTAA
GGGAAATTGCAGAAACATTAAATTTGCATGAATCAACAGTATCCCGGGTAACGACGCAAAAATATATGTATACTCCGCGG
GGTATTTTTGAGCTTAAATATTTTTTTGGAAGTCATGTTTCCACCGATTCAGGAGGAGCTTGTTCAGCTACGGCCATTCG
TGCATTAATCAAGCAATTGATACAGGAAGAGAATTCAAAAAAACCACTCAGCGATAATAAAATTTCAACTATTCTTGAAC
AACAAGGGATCGTTGTTGCGCGTCGTACCATTGCGAAGTACCGGGAATCATTACAGATTCCTGCAGCCAATCTTCGTAAA
TCAATTTAA

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(120-311)

Sigma-54, DNA binding domain (Sigma54_DBD)

(327-480)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

48.104

100

0.5

Multiple sequence alignment