Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ASZ86_RS03050 Genome accession   NZ_CP013319
Coordinates   611811..612329 (+) Length   172 a.a.
NCBI ID   WP_071919672.1    Uniprot ID   -
Organism   Vibrio cholerae strain NCTC9420     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 606811..617329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASZ86_RS03040 (ASZ86_00608) - 607221..610076 (+) 2856 WP_001233047.1 M16 family metallopeptidase -
  ASZ86_RS03045 (ASZ86_00609) gshA 610188..611762 (+) 1575 WP_000032608.1 glutamate--cysteine ligase -
  ASZ86_RS03050 (ASZ86_00610) luxS 611811..612329 (+) 519 WP_071919672.1 S-ribosylhomocysteine lyase Regulator
  ASZ86_RS03055 (ASZ86_00611) - 612399..613679 (-) 1281 WP_071919673.1 HlyC/CorC family transporter -
  ASZ86_RS03060 (ASZ86_00612) - 613762..614556 (-) 795 WP_000369278.1 cytochrome C assembly family protein -
  ASZ86_RS03065 (ASZ86_00613) ffh 614769..616154 (+) 1386 WP_000462721.1 signal recognition particle protein -
  ASZ86_RS03070 (ASZ86_00614) rpsP 616390..616638 (+) 249 WP_000256449.1 30S ribosomal protein S16 -
  ASZ86_RS03075 (ASZ86_00615) rimM 616666..617220 (+) 555 WP_000061906.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19070.87 Da        Isoelectric Point: 5.2199

>NTDB_id=162045 ASZ86_RS03050 WP_071919672.1 611811..612329(+) (luxS) [Vibrio cholerae strain NCTC9420]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMSNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=162045 ASZ86_RS03050 WP_071919672.1 611811..612329(+) (luxS) [Vibrio cholerae strain NCTC9420]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACTCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGTCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

99.419

100

0.994

Multiple sequence alignment