Detailed information NTG0162043

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ASZ86_RS02920
• Genome accession: NZ_CP013319
• Coordinates: 585095..586102 (+)
• Length: 335 a.a.
• NCBI ID: WP_071919671.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain NCTC9420
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 580095..591102

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ASZ86_RS02885 (ASZ86_00575)	ftsB	580146..580430 (+)	285	WP_001263189.1	cell division protein FtsB	-
ASZ86_RS02890 (ASZ86_00576)	ispD	580427..581125 (+)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ASZ86_RS02895 (ASZ86_00577)	ispF	581122..581598 (+)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ASZ86_RS02900 (ASZ86_00578)	truD	581628..582713 (+)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
ASZ86_RS02905 (ASZ86_00579)	surE	582715..583467 (+)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
ASZ86_RS02910 (ASZ86_00580)	-	583460..584086 (+)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ASZ86_RS02915 (ASZ86_00581)	nlpD	584086..585021 (+)	936	WP_000177568.1	murein hydrolase activator NlpD	-
ASZ86_RS02920 (ASZ86_00582)	rpoS	585095..586102 (+)	1008	WP_071919671.1	RNA polymerase sigma factor RpoS	Regulator
ASZ86_RS02925 (ASZ86_00584)	mutS	586195..588782 (-)	2588	Protein_500	DNA mismatch repair protein MutS	-
ASZ86_RS02930 (ASZ86_00585)	cysM	589050..589937 (-)	888	WP_001279365.1	cysteine synthase CysM	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38509.40 Da
• Isoelectric Point: 4.3361

>NTDB_id=162043 ASZ86_RS02920 WP_071919671.1 585095..586102(+) (rpoS) [Vibrio cholerae strain NCTC9420]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGVSEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIECALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=162043 ASZ86_RS02920 WP_071919671.1 585095..586102(+) (rpoS) [Vibrio cholerae strain NCTC9420]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGTAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAATGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 2 (Sigma70_r2) (95-156)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.403	100	0.994