Detailed information NTG0162025

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ASZ85_RS13605
• Genome accession: NZ_CP013317
• Coordinates: 2870057..2871064 (-)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain NCTC5395
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2865057..2876064

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ASZ85_RS13580 (ASZ85_02658)	rraA	2865632..2866147 (-)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-
ASZ85_RS13585 (ASZ85_02659)	-	2866222..2867139 (-)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ASZ85_RS13590 (ASZ85_02660)	hslU	2867243..2868574 (-)	1332	WP_001293366.1	HslU--HslV peptidase ATPase subunit	-
ASZ85_RS13595 (ASZ85_02661)	hslV	2868640..2869197 (-)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
ASZ85_RS13600 (ASZ85_02662)	-	2869334..2869885 (-)	552	WP_001884022.1	SPOR domain-containing protein	-
ASZ85_RS13605 (ASZ85_02664)	cytR	2870057..2871064 (-)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
ASZ85_RS13610 (ASZ85_02665)	priA	2871370..2873574 (-)	2205	WP_001247858.1	primosomal protein N'	-
ASZ85_RS13615	rpmE	2873829..2874047 (+)	219	WP_000643446.1	50S ribosomal protein L31	-
ASZ85_RS13620 (ASZ85_02668)	-	2874355..2875632 (+)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
ASZ85_RS13625 (ASZ85_02669)	metJ	2875743..2876060 (-)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=162025 ASZ85_RS13605 WP_000224452.1 2870057..2871064(-) (cytR) [Vibrio cholerae strain NCTC5395]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=162025 ASZ85_RS13605 WP_000224452.1 2870057..2871064(-) (cytR) [Vibrio cholerae strain NCTC5395]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904