Detailed information NTG0161975

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ASZ83_RS12010
• Genome accession: NZ_CP013315
• Coordinates: 2554566..2555555 (-)
• Length: 329 a.a.
• NCBI ID: WP_071919864.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain M2140
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2549566..2560555

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ASZ83_RS12000 (ASZ83_02327)	cysM	2550730..2551617 (+)	888	WP_001279365.1	cysteine synthase CysM	-
ASZ83_RS12005 (ASZ83_02328)	mutS	2551885..2554473 (+)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
ASZ83_RS12010 (ASZ83_02329)	rpoS	2554566..2555555 (-)	990	WP_071919864.1	RNA polymerase sigma factor RpoS	Regulator
ASZ83_RS12015 (ASZ83_02330)	nlpD	2555629..2556564 (-)	936	WP_000177568.1	murein hydrolase activator NlpD	-
ASZ83_RS12020 (ASZ83_02331)	-	2556564..2557190 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ASZ83_RS12025 (ASZ83_02332)	surE	2557183..2557935 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
ASZ83_RS12030 (ASZ83_02333)	truD	2557937..2559022 (-)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
ASZ83_RS12035 (ASZ83_02334)	ispF	2559052..2559528 (-)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ASZ83_RS12040 (ASZ83_02335)	ispD	2559525..2560223 (-)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ASZ83_RS12045 (ASZ83_02336)	ftsB	2560220..2560504 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37773.50 Da
• Isoelectric Point: 4.3361

>NTDB_id=161975 ASZ83_RS12010 WP_071919864.1 2554566..2555555(-) (rpoS) [Vibrio cholerae strain M2140]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNAD
PEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLNME
ALFNVEYDN

Nucleotide

• Length: 990 bp

>NTDB_id=161975 ASZ83_RS12010 WP_071919864.1 2554566..2555555(-) (rpoS) [Vibrio cholerae strain M2140]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTTGCTCGCGAATTATCACAGCGCCTTGACCACGA
ACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGCTGCGTCTTAACGAACGGA
TCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCAGACTCTCACAATGCCGAT
CCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACTTAATCCAAAGCAAAAAGA
AGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTCGTGAGATCAATCTCACTC
GTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAACAAGGTTTGAATATGGAA
GCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70 region 3 (Sigma70_r3) (172-243)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	98.209	100	1