Detailed information NTG0161948

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ASZ83_RS01345
• Genome accession: NZ_CP013315
• Coordinates: 266542..267549 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain M2140
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 261542..272549

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ASZ83_RS01325 (ASZ83_00255)	metJ	261546..261863 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
ASZ83_RS01330 (ASZ83_00256)	-	261974..263251 (-)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
ASZ83_RS01335	rpmE	263559..263777 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
ASZ83_RS01340 (ASZ83_00259)	priA	264032..266236 (+)	2205	WP_001247858.1	primosomal protein N'	-
ASZ83_RS01345 (ASZ83_00260)	cytR	266542..267549 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
ASZ83_RS01350 (ASZ83_00261)	-	267721..268272 (+)	552	WP_001884022.1	SPOR domain-containing protein	-
ASZ83_RS01355 (ASZ83_00262)	hslV	268409..268966 (+)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
ASZ83_RS01360 (ASZ83_00263)	hslU	269032..270363 (+)	1332	WP_001293366.1	HslU--HslV peptidase ATPase subunit	-
ASZ83_RS01365 (ASZ83_00264)	-	270467..271384 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ASZ83_RS01370 (ASZ83_00265)	rraA	271459..271974 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=161948 ASZ83_RS01345 WP_000224452.1 266542..267549(+) (cytR) [Vibrio cholerae strain M2140]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=161948 ASZ83_RS01345 WP_000224452.1 266542..267549(+) (cytR) [Vibrio cholerae strain M2140]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904