Detailed information NTG0161886

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ASZ88_RS13465
• Genome accession: NZ_CP013311
• Coordinates: 2851888..2852895 (-)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain E1320
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2846888..2857895

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ASZ88_RS13440 (ASZ88_02576)	rraA	2847463..2847978 (-)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-
ASZ88_RS13445 (ASZ88_02577)	-	2848053..2848970 (-)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ASZ88_RS13450 (ASZ88_02578)	hslU	2849074..2850405 (-)	1332	WP_001293366.1	HslU--HslV peptidase ATPase subunit	-
ASZ88_RS13455 (ASZ88_02579)	hslV	2850471..2851028 (-)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
ASZ88_RS13460 (ASZ88_02580)	-	2851165..2851716 (-)	552	WP_001884022.1	SPOR domain-containing protein	-
ASZ88_RS13465 (ASZ88_02581)	cytR	2851888..2852895 (-)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
ASZ88_RS13470 (ASZ88_02582)	priA	2853201..2855405 (-)	2205	WP_001247858.1	primosomal protein N'	-
ASZ88_RS13475 (ASZ88_02583)	rpmE	2855660..2855878 (+)	219	WP_000643446.1	50S ribosomal protein L31	-
ASZ88_RS13480 (ASZ88_02584)	-	2856186..2857463 (+)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
ASZ88_RS13485 (ASZ88_02585)	metJ	2857574..2857891 (-)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=161886 ASZ88_RS13465 WP_000224452.1 2851888..2852895(-) (cytR) [Vibrio cholerae strain E1320]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=161886 ASZ88_RS13465 WP_000224452.1 2851888..2852895(-) (cytR) [Vibrio cholerae strain E1320]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904