Detailed information NTG0161812

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ASZ87_RS06220
• Genome accession: NZ_CP013309
• Coordinates: 1360529..1361536 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae strain E1162
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1355529..1366536

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ASZ87_RS06210 (ASZ87_01199)	cysM	1356693..1357580 (+)	888	WP_001279365.1	cysteine synthase CysM	-
ASZ87_RS06215 (ASZ87_01200)	mutS	1357848..1360436 (+)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
ASZ87_RS06220 (ASZ87_01201)	rpoS	1360529..1361536 (-)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
ASZ87_RS06225 (ASZ87_01202)	nlpD	1361610..1362545 (-)	936	WP_000177568.1	murein hydrolase activator NlpD	-
ASZ87_RS06230 (ASZ87_01203)	-	1362545..1363171 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ASZ87_RS06235 (ASZ87_01204)	surE	1363164..1363916 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
ASZ87_RS06240 (ASZ87_01205)	truD	1363918..1365003 (-)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
ASZ87_RS06245 (ASZ87_01206)	ispF	1365033..1365509 (-)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ASZ87_RS06250 (ASZ87_01207)	ispD	1365506..1366204 (-)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ASZ87_RS06255 (ASZ87_01208)	ftsB	1366201..1366485 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=161812 ASZ87_RS06220 WP_000116737.1 1360529..1361536(-) (rpoS) [Vibrio cholerae strain E1162]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=161812 ASZ87_RS06220 WP_000116737.1 1360529..1361536(-) (rpoS) [Vibrio cholerae strain E1162]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1