Detailed information NTG0161648

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ASZ80_RS13675
• Genome accession: NZ_CP013301
• Coordinates: 2884807..2885814 (-)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain C5
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2879807..2890814

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ASZ80_RS13650 (ASZ80_02689)	rraA	2880382..2880897 (-)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-
ASZ80_RS13655 (ASZ80_02690)	-	2880972..2881889 (-)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ASZ80_RS13660 (ASZ80_02691)	hslU	2881993..2883324 (-)	1332	WP_001293366.1	HslU--HslV peptidase ATPase subunit	-
ASZ80_RS13665 (ASZ80_02692)	hslV	2883390..2883947 (-)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
ASZ80_RS13670	-	2884084..2884635 (-)	552	WP_001884022.1	SPOR domain-containing protein	-
ASZ80_RS13675 (ASZ80_02695)	cytR	2884807..2885814 (-)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
ASZ80_RS13680 (ASZ80_02696)	priA	2886120..2888324 (-)	2205	WP_001247858.1	primosomal protein N'	-
ASZ80_RS13685	rpmE	2888579..2888797 (+)	219	WP_000643446.1	50S ribosomal protein L31	-
ASZ80_RS13690 (ASZ80_02699)	-	2889105..2890382 (+)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
ASZ80_RS13695 (ASZ80_02700)	metJ	2890493..2890810 (-)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=161648 ASZ80_RS13675 WP_000224452.1 2884807..2885814(-) (cytR) [Vibrio cholerae strain C5]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=161648 ASZ80_RS13675 WP_000224452.1 2884807..2885814(-) (cytR) [Vibrio cholerae strain C5]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904