Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ASZ80_RS03055 Genome accession   NZ_CP013301
Coordinates   601636..602154 (+) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae strain C5     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 596636..607154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASZ80_RS03045 (ASZ80_00602) - 597046..599901 (+) 2856 WP_001233047.1 M16 family metallopeptidase -
  ASZ80_RS03050 (ASZ80_00603) gshA 600013..601587 (+) 1575 WP_000032608.1 glutamate--cysteine ligase -
  ASZ80_RS03055 (ASZ80_00604) luxS 601636..602154 (+) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  ASZ80_RS03060 (ASZ80_00605) - 602224..603504 (-) 1281 WP_000340990.1 HlyC/CorC family transporter -
  ASZ80_RS03065 (ASZ80_00606) - 603587..604381 (-) 795 WP_000369278.1 cytochrome C assembly family protein -
  ASZ80_RS03070 (ASZ80_00607) ffh 604594..605979 (+) 1386 WP_000462720.1 signal recognition particle protein -
  ASZ80_RS03075 (ASZ80_00608) rpsP 606215..606463 (+) 249 WP_000256449.1 30S ribosomal protein S16 -
  ASZ80_RS03080 (ASZ80_00609) rimM 606491..607045 (+) 555 WP_000061906.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=161622 ASZ80_RS03055 WP_001130227.1 601636..602154(+) (luxS) [Vibrio cholerae strain C5]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=161622 ASZ80_RS03055 WP_001130227.1 601636..602154(+) (luxS) [Vibrio cholerae strain C5]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACTCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment