Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   A6L25_RS10600 Genome accession   NZ_CP016652
Coordinates   2052400..2052906 (-) Length   168 a.a.
NCBI ID   WP_002218101.1    Uniprot ID   A1KW60
Organism   Neisseria meningitidis strain M08001     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2047400..2057906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L25_RS10595 (A6L25_10595) polA 2049462..2052254 (-) 2793 WP_002224673.1 DNA polymerase I -
  A6L25_RS10600 (A6L25_10600) luxS 2052400..2052906 (-) 507 WP_002218101.1 S-ribosylhomocysteine lyase Regulator
  A6L25_RS10605 (A6L25_10605) - 2052928..2053347 (-) 420 WP_002218100.1 DUF2251 domain-containing protein -
  A6L25_RS10610 (A6L25_10610) cyaY 2053378..2053701 (-) 324 WP_002219897.1 iron donor protein CyaY -
  A6L25_RS10615 (A6L25_10615) lptM 2053772..2053942 (+) 171 WP_002219896.1 LPS translocon maturation chaperone LptM -
  A6L25_RS10620 (A6L25_10620) lysA 2053953..2055197 (+) 1245 WP_002224130.1 diaminopimelate decarboxylase -
  A6L25_RS12975 - 2055233..2055325 (-) 93 WP_002233157.1 methionine/alanine import family NSS transporter small subunit -
  A6L25_RS10625 (A6L25_10625) - 2055322..2056857 (-) 1536 WP_002221654.1 sodium-dependent transporter -
  A6L25_RS10630 (A6L25_10630) - 2057070..2057678 (-) 609 WP_109535434.1 IS1595 family transposase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18683.41 Da        Isoelectric Point: 5.5451

>NTDB_id=161618 A6L25_RS10600 WP_002218101.1 2052400..2052906(-) (luxS) [Neisseria meningitidis strain M08001]
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCIPNKEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMQDVGNVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLARKVAVNKNEELT
LDEGLLNA

Nucleotide


Download         Length: 507 bp        

>NTDB_id=161618 A6L25_RS10600 WP_002218101.1 2052400..2052906(-) (luxS) [Neisseria meningitidis strain M08001]
ATGCCCCTACTAGACAGTTTCAAAGTCGATCACACCCGTATGCATGCCCCCGCCGTACGCGTGGCGAAAACCATGACCAC
GCCCAAAGGCGACACCATTACCGTGTTCGACCTGCGCTTTTGCATTCCCAACAAAGAAATCCTGCCTGAAAAAGGCATAC
ACACGCTGGAGCATTTGTTCGCAGGTTTTATGCGCGACCACTTGAACGGCAACGGCGTGGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACCGGTTTCTACATGAGCCTTATCGGCACGCCTTCCGAACAGCAGGTCGCCGATGCATGGCTCGCCTC
GATGCAGGATGTGGGCAATGTCAAAGACCAAAGCAAAATCCCCGAGTTGAACGAATACCAATGCGGCACTTATCAAATGC
ACTCGCTCGCCGAAGCGCAGCAAATCGCGCAAAACGTGTTGGCGCGCAAAGTGGCGGTGAACAAAAACGAAGAGCTGACG
CTGGATGAAGGGCTGCTGAACGCCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1KW60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

76.647

99.405

0.762