Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NPD1_RS13505 Genome accession   NZ_CP013296
Coordinates   2514753..2515706 (+) Length   317 a.a.
NCBI ID   WP_003356131.1    Uniprot ID   -
Organism   Clostridium botulinum strain CDC_54064     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2509753..2520706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPD1_RS13480 (NPD1_2419) - 2509874..2510110 (+) 237 WP_011948713.1 SHOCT domain-containing protein -
  NPD1_RS13485 (NPD1_2420) - 2510380..2511081 (+) 702 WP_003356293.1 response regulator transcription factor -
  NPD1_RS13490 (NPD1_2421) - 2511081..2512487 (+) 1407 WP_003356723.1 sensor histidine kinase -
  NPD1_RS13495 (NPD1_2422) - 2512827..2513513 (-) 687 WP_021107515.1 DNA alkylation repair protein -
  NPD1_RS13500 (NPD1_2423) - 2513749..2514507 (-) 759 WP_014520256.1 helix-turn-helix domain-containing protein -
  NPD1_RS13505 (NPD1_2424) ceuB 2514753..2515706 (+) 954 WP_003356131.1 ABC transporter permease Machinery gene
  NPD1_RS13510 (NPD1_2425) - 2515696..2516646 (+) 951 WP_003357016.1 iron chelate uptake ABC transporter family permease subunit -
  NPD1_RS13515 (NPD1_2426) - 2516643..2517398 (+) 756 WP_011948720.1 ABC transporter ATP-binding protein -
  NPD1_RS13520 (NPD1_2427) - 2517472..2518416 (+) 945 WP_012705065.1 siderophore ABC transporter substrate-binding protein -
  NPD1_RS13530 (NPD1_2428) - 2518619..2519620 (+) 1002 WP_012705541.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34888.28 Da        Isoelectric Point: 10.0382

>NTDB_id=161594 NPD1_RS13505 WP_003356131.1 2514753..2515706(+) (ceuB) [Clostridium botulinum strain CDC_54064]
MKKRYLILALIILSICSIFIGVKDISFIDIFNSDDVKLKVLLISRIPRLISIIVVGVSMSIAGLIMQQISRNKFVSPDTA
STIDSAKLGVLVALMIFPSATITEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYNLI
QSIASWLQGDFSLIIKGNYELIYFSLPLVVIAFIYANKFTVAGMGEDFSKNLGVNYNRIINIGLVIVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSLCSTALLGAVFLLGCDILGRLVIYPYEISIGLVVGVIGSMVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=161594 NPD1_RS13505 WP_003356131.1 2514753..2515706(+) (ceuB) [Clostridium botulinum strain CDC_54064]
ATGAAAAAGAGATATTTAATTTTAGCATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGCTT
TATAGATATATTTAATTCAGATGATGTGAAGCTTAAGGTATTATTAATTAGTAGAATCCCAAGACTTATAAGTATTATTG
TAGTAGGGGTTAGTATGAGTATAGCAGGACTTATTATGCAACAAATAAGTCGAAATAAATTTGTATCTCCAGATACGGCT
TCAACTATAGATAGTGCAAAGCTTGGGGTTTTAGTTGCTTTAATGATATTTCCTTCAGCAACTATTACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTAGGTACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATCT
TCATACCACTCGTAGGTATAATGCTTGGAAATATAATAGATTCAATAACTACGTTTTTTGCATATAAATATAATCTTATT
CAAAGTATTGCCTCTTGGCTTCAAGGTGATTTTTCTTTAATTATTAAAGGAAATTATGAACTTATATATTTTAGTCTACC
ACTTGTAGTCATAGCCTTTATTTATGCTAATAAATTTACAGTAGCAGGTATGGGAGAGGATTTTTCCAAGAATTTAGGTG
TTAATTATAACAGAATCATAAATATAGGACTTGTAATAGTAGCATTAATATCTTCACTAGTAGTTATTACTGTAGGAAAA
ATACCATTCCTAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGGGATAATTTAAAAAATAGTCTTTGTAGTAC
AGCATTGCTTGGAGCAGTATTTCTCTTAGGTTGTGACATATTAGGTAGGTTAGTTATTTATCCCTATGAGATATCTATAG
GACTTGTAGTTGGAGTTATAGGAAGTATGGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.447

98.107

0.505

Multiple sequence alignment