Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ATE47_RS12825 Genome accession   NZ_CP013293
Coordinates   2783547..2784896 (+) Length   449 a.a.
NCBI ID   WP_062162343.1    Uniprot ID   -
Organism   Chryseobacterium sp. IHB B 17019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2778547..2789896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATE47_RS12810 (ATE47_12800) yidC 2779058..2780854 (-) 1797 WP_062162340.1 membrane protein insertase YidC -
  ATE47_RS12815 (ATE47_12805) - 2781032..2782639 (-) 1608 WP_062162341.1 CTP synthase -
  ATE47_RS12820 (ATE47_12810) - 2782850..2783419 (-) 570 WP_062162342.1 YceI family protein -
  ATE47_RS12825 (ATE47_12815) radA 2783547..2784896 (+) 1350 WP_062162343.1 DNA repair protein RadA Machinery gene
  ATE47_RS12830 (ATE47_12820) - 2784970..2786313 (+) 1344 WP_062162344.1 M57 family metalloprotease -
  ATE47_RS12835 (ATE47_12825) - 2786419..2787012 (+) 594 WP_062162345.1 ACP phosphodiesterase -
  ATE47_RS12840 (ATE47_12830) - 2787057..2788304 (-) 1248 WP_062162346.1 hypothetical protein -
  ATE47_RS12845 (ATE47_12835) - 2788482..2788982 (-) 501 WP_062162347.1 DUF6702 family protein -
  ATE47_RS12850 (ATE47_12840) - 2789052..2789630 (+) 579 WP_062162348.1 HupE/UreJ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49826.45 Da        Isoelectric Point: 6.6121

>NTDB_id=161575 ATE47_RS12825 WP_062162343.1 2783547..2784896(+) (radA) [Chryseobacterium sp. IHB B 17019]
MAKLRTAYFCQNCGTQYSQWMGQCKNCGEWNTLVEEVVEKTSSKTPPFSKSKQHVINIIEVETSEEPRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLTDIQNPNCFLFTETSLEKILHEAKKL
EPDFMIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNIPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMVSQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDAKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEHYCFAGEIGLSGEIRPV
AQAEQRIIEAEKLGYEKIFISNLNKLSKKKFAIKIEEVSKIEDFHNKLL

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=161575 ATE47_RS12825 WP_062162343.1 2783547..2784896(+) (radA) [Chryseobacterium sp. IHB B 17019]
ATGGCAAAATTAAGAACAGCATATTTCTGTCAAAACTGCGGAACCCAATATTCCCAATGGATGGGACAATGCAAAAACTG
TGGAGAATGGAATACTTTGGTGGAAGAAGTTGTAGAAAAAACCTCATCTAAAACTCCGCCTTTTTCAAAATCGAAACAGC
ATGTCATTAATATTATTGAGGTAGAAACCAGCGAAGAACCAAGAATAAAAACCCCTTCCGAAGAACTCAATCGCGTTTTG
GGAGGCGGAATTGTCTTAGGTTCCGTTACATTAATTGGTGGTGAACCCGGAATTGGTAAGTCTACTCTGCTTCTTCAATT
GGCTTTGAAGATGAAGAAAAAAATCTTCTACGTTTCAGGCGAGGAAAGTGCTTCCCAGATCAAAATGAGAGCCGACAGAT
TAACGGATATTCAAAATCCCAACTGTTTTCTTTTTACAGAAACTTCTCTGGAAAAAATTCTTCACGAAGCTAAAAAACTG
GAGCCTGATTTTATGATTATCGACTCCATTCAGACATTACAATCTCAATTAATAGAAAGCTCTCCCGGAACAGTTTCCCA
GATCAGAGAATGCTCCAACGAGATCATTAAATACGCCAAAGAAAACAATATTCCCGTTTTTCTAGTTGGCCATATCACCA
AAGACGGTCAGATTGCCGGCCCAAAGGTTTTGGAACACATGGTGGACGTTGTTTTGAATTTCGATGGCGACAGAAATCAC
CTTTTCAGACTGTTGAGAGCCAATAAAAACCGTTTCGGATCAACTTCCGAGATCGGGATTTATGAAATGGTTTCTCAAGG
TTTAAAGGAAATTAAAAATCCATCAGAAATTTTAATTACAAAGAAATTCGAGGAACTTTCCGGAAATTCCGTAGCAGTAA
CTTTGGAAGGAAACCGACCTATGTTACTGGAAATTCAGGCTTTGGTAAGTACAGCTGTTTATGGAACACCTCAGAGAAGT
TCAACGGGTTTTGATGCCAAAAGATTAAATATGCTTTTGGCCGTTTTGGAAAAAAGAGCCGGTTTTCAACTGGGTGCAAA
AGATGTTTTTTTAAATATCACCGGAGGAATAAAAACTGATGATCCCGCATTGGATCTGGCCGTCGTAGCTTCTATTCTGT
CTTCAAACGAAGATATTGCGATTTCCGAACATTATTGTTTTGCAGGAGAAATTGGCTTGAGCGGAGAAATCCGTCCGGTC
GCACAAGCCGAACAACGAATTATCGAAGCTGAAAAATTGGGTTACGAGAAAATTTTTATATCTAATTTAAACAAACTTTC
AAAGAAAAAATTCGCGATAAAAATTGAAGAAGTGAGTAAAATAGAGGACTTCCATAATAAGTTACTATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(338-422)

AAA domain (AAA_25)

(65-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.342

97.773

0.492
  radA Streptococcus mitis NCTC 12261

47.619

100

0.49
  radA Streptococcus pneumoniae D39

49.652

95.991

0.477
  radA Streptococcus pneumoniae TIGR4

49.652

95.991

0.477
  radA Streptococcus mitis SK321

49.652

95.991

0.477
  radA Streptococcus pneumoniae R6

49.652

95.991

0.477
  radA Streptococcus pneumoniae Rx1

49.652

95.991

0.477

Multiple sequence alignment