Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ATE44_RS03870 Genome accession   NZ_CP013287
Coordinates   788819..790624 (-) Length   601 a.a.
NCBI ID   WP_003729593.1    Uniprot ID   -
Organism   Listeria monocytogenes strain WSLC 1020     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 783819..795624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATE44_RS03850 (ATE44_03850) isdE 784743..785615 (-) 873 WP_003729589.1 heme ABC transporter substrate-binding protein IsdE -
  ATE44_RS03855 (ATE44_03855) hbp2 785702..787411 (-) 1710 WP_003729590.1 hemin/hemoglobin-binding protein Hbp2 -
  ATE44_RS03860 (ATE44_03860) isdC 787424..788050 (-) 627 WP_003729591.1 heme uptake protein IsdC -
  ATE44_RS03865 (ATE44_03865) - 788261..788521 (-) 261 WP_003729592.1 DUF3116 family protein -
  ATE44_RS03870 (ATE44_03870) pepF 788819..790624 (-) 1806 WP_003729593.1 oligoendopeptidase F Regulator
  ATE44_RS03875 (ATE44_03875) - 790697..791812 (-) 1116 WP_003729594.1 competence protein CoiA -
  ATE44_RS03880 (ATE44_03880) mecA 791939..792592 (-) 654 WP_003722314.1 adaptor protein MecA -
  ATE44_RS03885 (ATE44_03885) spxA 792824..793219 (-) 396 WP_003720569.1 transcriptional regulator SpxA -
  ATE44_RS03890 (ATE44_03890) - 793539..794507 (-) 969 WP_003729595.1 ABC transporter ATP-binding protein -
  ATE44_RS03895 (ATE44_03895) - 794504..795580 (-) 1077 WP_003722316.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68518.64 Da        Isoelectric Point: 4.5922

>NTDB_id=161444 ATE44_RS03870 WP_003729593.1 788819..790624(-) (pepF) [Listeria monocytogenes strain WSLC 1020]
MSKTNALPLREEVPENLTWDLTTIYPNDEAWEQAFTDLQKITEESEQFKGRLSGSSQTLYEALQFRDNAYDLISNLYVYA
HLKMDQDTANAKYQGLHSRAGSLVTKLMSALSYYDPEILAMDESVLKQFLNENKDLQLYAHLLEELNLSRPYILSEKEEA
LLANAGEVLGSSSNTFNTLNNADMKFPTIKDENGEDIEITHGRFGKLLESNDPRVRREAFLGVYSVYEGLKNTLASTLNG
QVKKSNFYASTRGYTSAREAALSGNHIPETVYDSLLKSVNANADLLHRYVKLRKELLGLEELHMYDLYTPLSDDVNLEFT
YEEAKELVLEALKPLGDEYQAILKEAFDSRWIDVMENKGKRSGAYSSGSYSTNPYILLNWQDNINNVYTLAHELGHSVHS
YYTRKNQPFVYGDYSIFLAEVASTTNENLLTDYLLKKYEDPKVRAYLLNHYLDGFKGTVFRQTQFAEFEHAIHQADQQGV
ALTADFLTETYFDINKKYYGEAMVYDAEIGYEWSRIPHFYMNYYVFQYATGFSAASALSAKILTEGQEAVTSYIDFLKAG
SSDYPIDVLKKAGVDMATPNPVDDALKVFEQRLDELEKLVK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=161444 ATE44_RS03870 WP_003729593.1 788819..790624(-) (pepF) [Listeria monocytogenes strain WSLC 1020]
TTGAGTAAAACAAATGCATTACCTTTAAGAGAAGAAGTACCAGAAAATCTAACTTGGGATTTAACTACGATTTATCCAAA
TGATGAAGCTTGGGAACAAGCATTTACAGATTTGCAAAAAATCACAGAAGAAAGCGAGCAATTTAAAGGGCGTTTATCGG
GAAGCAGCCAGACACTATATGAAGCACTTCAATTTCGAGATAATGCATATGATTTAATTAGTAACTTATATGTATATGCG
CATTTGAAAATGGACCAAGATACAGCTAATGCGAAATATCAAGGTTTACATAGTCGCGCAGGAAGCCTAGTTACAAAGCT
AATGTCTGCACTGTCTTATTATGATCCGGAAATTTTAGCTATGGACGAAAGTGTTTTAAAACAATTTTTAAATGAGAATA
AAGATTTACAATTATATGCGCATTTACTAGAAGAATTAAATTTAAGCCGACCGTATATTTTAAGTGAGAAAGAGGAGGCT
TTACTAGCTAACGCAGGTGAAGTGCTTGGAAGTTCGTCTAATACTTTTAATACCTTGAATAATGCAGATATGAAGTTTCC
AACTATTAAAGATGAGAACGGGGAAGATATCGAAATTACTCATGGTCGTTTCGGGAAATTGTTGGAAAGCAATGATCCAC
GTGTTCGTCGTGAAGCGTTTCTTGGTGTGTATTCTGTGTATGAAGGCCTAAAAAACACCTTAGCATCTACTTTAAATGGA
CAAGTGAAGAAGTCTAATTTTTATGCCTCTACTCGTGGCTACACGTCAGCTCGTGAAGCGGCTCTTTCTGGGAACCATAT
TCCTGAAACAGTATATGATTCTTTGTTAAAATCAGTAAATGCGAATGCAGATTTGCTTCATCGTTATGTGAAGTTGCGTA
AAGAATTACTTGGCTTAGAGGAATTGCATATGTATGATCTTTATACGCCACTTTCTGATGATGTTAATTTGGAATTTACT
TATGAAGAAGCGAAAGAACTTGTGCTTGAAGCGCTTAAACCGCTTGGTGATGAATATCAAGCAATTTTAAAAGAAGCATT
TGATAGTCGTTGGATTGATGTTATGGAGAATAAAGGGAAACGTAGTGGAGCCTATTCATCTGGTTCATATAGTACGAATC
CTTATATTTTACTCAATTGGCAAGATAATATTAATAATGTTTATACACTTGCGCATGAATTAGGGCATAGTGTGCATAGT
TATTATACAAGAAAAAATCAACCTTTTGTTTACGGCGATTATTCGATTTTCTTGGCAGAAGTTGCTTCTACGACCAATGA
AAATCTGTTGACTGATTATCTGCTTAAGAAATATGAGGATCCTAAGGTACGTGCTTATTTGTTGAATCACTATTTGGATG
GATTCAAAGGGACTGTATTCCGTCAAACGCAATTTGCTGAATTTGAGCATGCAATTCATCAAGCCGATCAGCAAGGTGTG
GCGCTGACTGCGGATTTCTTAACAGAAACATATTTTGATATTAATAAGAAATATTACGGGGAAGCGATGGTTTATGATGC
TGAAATTGGTTATGAATGGTCTCGTATTCCGCATTTTTATATGAATTATTATGTATTCCAATATGCGACTGGTTTTTCTG
CAGCGTCTGCATTGAGTGCGAAAATTTTAACAGAAGGCCAAGAAGCGGTAACTTCCTATATTGATTTCTTGAAAGCGGGA
AGTTCGGATTATCCTATCGATGTGTTGAAAAAAGCAGGAGTAGATATGGCAACTCCTAATCCGGTGGATGATGCACTAAA
AGTATTTGAACAAAGATTAGATGAACTAGAGAAATTAGTTAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.182

98.502

0.504

Multiple sequence alignment