Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ATE43_RS05575 Genome accession   NZ_CP013286
Coordinates   1107722..1109413 (+) Length   563 a.a.
NCBI ID   WP_003738883.1    Uniprot ID   A0A0B8RFK2
Organism   Listeria monocytogenes strain WSLC 1019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1102722..1114413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATE43_RS05550 (ATE43_05550) - 1102872..1103753 (+) 882 WP_014930472.1 polyprenyl synthetase family protein -
  ATE43_RS05555 (ATE43_05555) - 1103952..1104152 (+) 201 WP_003719639.1 cold-shock protein -
  ATE43_RS05560 (ATE43_05560) dxs 1104319..1106238 (+) 1920 WP_003729891.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ATE43_RS05565 (ATE43_05565) - 1106235..1107059 (+) 825 WP_003729890.1 TlyA family RNA methyltransferase -
  ATE43_RS05570 (ATE43_05570) ahrC 1107250..1107699 (+) 450 WP_003722493.1 transcriptional regulator AhrC/ArgR -
  ATE43_RS05575 (ATE43_05575) recN 1107722..1109413 (+) 1692 WP_003738883.1 DNA repair protein RecN Machinery gene
  ATE43_RS05580 (ATE43_05580) - 1109543..1110409 (+) 867 WP_003729889.1 phosphate acyltransferase -
  ATE43_RS05585 (ATE43_05585) buk 1110546..1111613 (+) 1068 WP_003729888.1 butyrate kinase -
  ATE43_RS05590 (ATE43_05590) lpdA 1111628..1113055 (+) 1428 WP_003729887.1 dihydrolipoyl dehydrogenase -
  ATE43_RS05595 (ATE43_05595) - 1113080..1114075 (+) 996 WP_003729886.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63518.26 Da        Isoelectric Point: 5.1296

>NTDB_id=161407 ATE43_RS05575 WP_003738883.1 1107722..1109413(+) (recN) [Listeria monocytogenes strain WSLC 1019]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSADFIRHGEERLELQGLFALAEDNLACRNA
LIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPAL
TKYQTNFKEYQTIEKEWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNILANFEKLNENLQGAYAAIQG
EPGGLEFVGEAMRQMEAAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEQEISSEMEKLTDSESHVGHLETKLATLKAELTKQANTLTEIRKKAAVTLEKQIKQELNHLYMEKAIFSVRFE
ANKMELTDSGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTVLKGEEKVEEISRMIAGIEVTELTKQHAKEMIEQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=161407 ATE43_RS05575 WP_003738883.1 1107722..1109413(+) (recN) [Listeria monocytogenes strain WSLC 1019]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCGCTTTCTTTAACTTTTCAAGAAGGGATGACGGTACT
TACGGGGGAGACCGGCGCTGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGCGGATCAGCTGATT
TTATCCGTCATGGAGAAGAACGTTTAGAACTTCAAGGGCTTTTTGCGCTAGCAGAGGATAACCTTGCTTGCCGAAATGCG
TTAATTGAAAATGGGATAGATGCTTCGGATGATATGGTTGTACTAGAACGCAGCCTGTTTCGCTCGGGGAAAAATAGTTG
CCGAATTAATGGCAAGCTTGTAACTACAGTTCTCTTGCGCCAAATTGGCTCGAAATTAATAGATATCCATAGTCAGCATG
AACATCAGGAATTGATGAATGAGGAGTTTCATTTATCATTACTTGATCGTTTCGCTTCTGACAAAATCAAGCCAGCACTA
ACCAAGTACCAAACTAATTTCAAAGAATATCAAACAATTGAGAAAGAGTGGCAAAATTGGACAAAAAATGAGCGAGAATT
AGCACAACGTCTGGATATGCTCCGTTTTCAACAACAGGAAATTGAAAATGCCAATTTGCAAGCTGGTGAAGAAGATCGCT
TGTTAGAACAAAAAAATATCTTAGCCAATTTTGAAAAACTTAACGAAAATTTACAAGGAGCTTATGCCGCGATTCAAGGT
GAGCCTGGTGGGCTGGAATTTGTTGGAGAAGCAATGCGCCAAATGGAAGCAGCGGCGAGTATTCATACGGATTATAAAGC
GGTTAGCGAGGCCATTTCTTCTAGTTACTATATGTTAGAAGATAGCATGAGTCAAATTAGGCAATCACTGGATCAGCTCG
AATTCCAACCAGAAGAGCTGAATCAAATTGAATCACGTTTGAATGATTTAAACCAATTAAAACGCAAATATGGCAAAACC
ATTGAAGATATCATTCAATACGAACAAGAAATAAGCAGCGAAATGGAAAAACTGACAGATAGTGAATCACATGTCGGGCA
TTTAGAGACCAAATTAGCAACACTAAAAGCAGAACTAACAAAACAGGCGAACACACTAACAGAAATCCGTAAAAAAGCGG
CTGTTACGTTAGAAAAGCAAATCAAACAAGAATTAAATCATTTATATATGGAGAAAGCCATTTTTAGTGTACGCTTTGAA
GCAAATAAAATGGAACTAACAGATTCAGGGCAAGATAGCGTCGTTTTCTATATGTCAACAAACCCGGGTGAACCTTTAAA
ACCATTGGCAAAAATCGCTTCGGGGGGAGAGTTATCTAGAATGATGTTAGCATTAAAAACCATTTTTTCTAGGCACCAAG
GTATCACCTCGATTATTTTCGATGAAGTAGATACTGGTGTAAGTGGTCGCGTTGGTCAAGCGATTGCAGAAAAAATTTAT
GCTGTTTCAGTTGGCTCGCAAGTACTATGCATTAGTCACTTACCTCAAGTTGCAGCAATGGCGAACCACCACTACTACAT
TACGAAAAAAGTCCAAAACAAACGGACAACAACTTCCGTTACAGTGCTTAAAGGAGAAGAGAAAGTAGAAGAAATCAGTC
GAATGATTGCTGGAATAGAAGTCACCGAATTAACCAAACAACATGCAAAAGAAATGATTGAACAAGCGGAAAAAGTAAAA
CAAACGTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B8RFK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.257

100

0.535

Multiple sequence alignment