Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ATN06_RS27830 Genome accession   NZ_CP013274
Coordinates   5316900..5318027 (+) Length   375 a.a.
NCBI ID   WP_060633074.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain CTC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5311900..5323027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATN06_RS27800 (ATN06_27565) spoIIIJ 5311940..5312707 (-) 768 WP_060633071.1 YidC family membrane integrase SpoIIIJ -
  ATN06_RS27805 (ATN06_27570) rnpA 5312760..5313107 (-) 348 WP_000726627.1 ribonuclease P protein component -
  ATN06_RS27810 (ATN06_27575) rpmH 5313184..5313318 (-) 135 WP_000831901.1 50S ribosomal protein L34 -
  ATN06_RS27815 (ATN06_27580) dnaA 5313884..5315224 (+) 1341 WP_060633072.1 chromosomal replication initiator protein DnaA -
  ATN06_RS27820 (ATN06_27585) dnaN 5315404..5316543 (+) 1140 WP_060633073.1 DNA polymerase III subunit beta -
  ATN06_RS27825 (ATN06_27590) yaaA 5316675..5316887 (+) 213 WP_000821369.1 S4 domain-containing protein YaaA -
  ATN06_RS27830 (ATN06_27595) recF 5316900..5318027 (+) 1128 WP_060633074.1 DNA replication/repair protein RecF Machinery gene
  ATN06_RS27835 (ATN06_27600) gyrB 5318066..5319988 (+) 1923 WP_060633075.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  ATN06_RS27840 (ATN06_27605) gyrA 5320077..5322548 (+) 2472 WP_060633076.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43392.70 Da        Isoelectric Point: 6.7812

>NTDB_id=161308 ATN06_RS27830 WP_060633074.1 5316900..5318027(+) (recF) [Bacillus thuringiensis strain CTC]
MFIKEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDYGQIKGSLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGTKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIIYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNGKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=161308 ATN06_RS27830 WP_060633074.1 5316900..5318027(+) (recF) [Bacillus thuringiensis strain CTC]
TTGTTTATTAAAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAGGATAAGGTCAATGT
AATTATTGGCGAAAATGCACAAGGGAAAACAAATTTGATGGAAGCTATTTACGTATTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGTGAGCTCATTCGCTGGGATGAAGATTATGGTCAAATCAAAGGTAGCTTGCAAAAAAGAAACAGTTCT
TTGTCTTTAGAATTAAATATTTCTAAAAAAGGCAAAAAGGCAAAGTTAAATCAACTTGAACAACAAAAACTAAGCCAATA
CATCGGTGAAATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAACTTGGACAAATAGCACCCGTTTATTTGTATGAACTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGCTTAAAAAAATGCAAGGGAATAGCAAAAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTCATTGA
ACATGGTACAAAAATATTGCGAAAACGTTTTGAGTTTTTGCACTTACTACAAGAATGGGCTGCACCAATCCATCGTGGGA
TTAGTAGAGGATTAGAGGAGTTAGAAATCATCTATAAACCAAGCGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATAGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATGGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCAATTCTTTTATTAGATGATGTTTTATCA
GAGCTAGATGATTATCGTCAATCACATCTGTTAAATACAATTCAAGGTAAGGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTGAAAGAAGCAAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.848

98.133

0.656

Multiple sequence alignment