Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ATN06_RS20315 Genome accession   NZ_CP013274
Coordinates   3930401..3930859 (+) Length   152 a.a.
NCBI ID   WP_000804864.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain CTC     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3925401..3935859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATN06_RS20300 (ATN06_20070) - 3926058..3926294 (+) 237 WP_048563234.1 hypothetical protein -
  ATN06_RS20305 (ATN06_20075) - 3926470..3928578 (-) 2109 WP_060632089.1 polyphosphate kinase -
  ATN06_RS20310 (ATN06_20080) ppx 3928686..3930223 (-) 1538 Protein_3905 exopolyphosphatase -
  ATN06_RS20315 (ATN06_20085) kre 3930401..3930859 (+) 459 WP_000804864.1 YkyB family protein Regulator
  ATN06_RS20320 (ATN06_20090) - 3930891..3931553 (-) 663 WP_000922490.1 YkyA family protein -
  ATN06_RS20330 (ATN06_20100) - 3932204..3932845 (-) 642 WP_060632091.1 diguanylate cyclase domain-containing protein -
  ATN06_RS20335 (ATN06_20105) - 3933010..3933243 (+) 234 WP_033691462.1 SPP1 phage holin family protein -
  ATN06_RS20340 (ATN06_20110) - 3933275..3933775 (-) 501 WP_060632092.1 hypothetical protein -
  ATN06_RS20345 (ATN06_20115) - 3934198..3935739 (+) 1542 WP_060632093.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17757.49 Da        Isoelectric Point: 10.6793

>NTDB_id=161287 ATN06_RS20315 WP_000804864.1 3930401..3930859(+) (kre) [Bacillus thuringiensis strain CTC]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=161287 ATN06_RS20315 WP_000804864.1 3930401..3930859(+) (kre) [Bacillus thuringiensis strain CTC]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCTGCAACTAACCCGAAGTATTTATACTGGTTAAAAAAGACGGCTTTAGAACGCTTAATTGCTGAAA
AAAAAGCTATAAAAGAAGGATTGCATTTTTCTAGAAATCCACGTTTTAGCCAACAACAATCTGATGTTCTTATACGTTTA
GGCGATTATTTTTTCCATATTCCTCCTACAAAAGAAGATTTTCGAATCCTACCACATCTTGGTCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCACTGAAAC
AAGAAAAAAAGTTAAGTGAACCTGTCCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

64.655

76.316

0.493

Multiple sequence alignment